Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 4
- plastid 1
- extracellular 2
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 2
- golgi 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
plasma membrane:
27800704
plasma membrane: 28056797 |
msms PMID:
27800704
doi
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
msms PMID:
28056797
doi
Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China., Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China. twang@ibcas.ac.cn.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER95509 | Sorghum | cytosol | 90.0 | 90.0 |
| TraesCS4B01G310800.1 | Wheat | cytosol, extracellular | 86.67 | 87.92 |
| TraesCS4A01G410700.1 | Wheat | cytosol, extracellular | 86.67 | 87.92 |
| TraesCS4D01G308700.1 | Wheat | cytosol, extracellular | 86.19 | 87.44 |
| Os10t0456600-01 | Rice | cytosol | 82.38 | 77.93 |
| GSMUA_AchrUn_... | Banana | cytosol | 74.76 | 73.36 |
| GSMUA_Achr11P... | Banana | cytosol | 73.33 | 72.99 |
| HORVU4Hr1G079250.1 | Barley | cytosol, plastid | 86.19 | 72.69 |
| VIT_08s0007g04740.t01 | Wine grape | cytosol | 71.9 | 71.56 |
| AT5G03530.1 | Thale cress | cytosol | 69.05 | 69.05 |
| KRH19962 | Soybean | cytosol | 69.05 | 68.72 |
| CDY10375 | Canola | cytosol | 68.57 | 68.57 |
| Solyc09g008460.2.1 | Tomato | plastid | 70.48 | 68.52 |
| KRH32565 | Soybean | extracellular | 69.05 | 68.4 |
| CDY11028 | Canola | cytosol | 28.57 | 68.18 |
| PGSC0003DMT400009952 | Potato | cytosol | 70.0 | 68.06 |
| CDX70301 | Canola | cytosol | 67.62 | 67.62 |
| Bra009524.1-P | Field mustard | cytosol | 67.14 | 67.14 |
| KRH67770 | Soybean | endoplasmic reticulum | 67.14 | 66.82 |
| CDY44372 | Canola | cytosol | 67.14 | 66.51 |
| CDY04887 | Canola | cytosol | 67.14 | 66.51 |
| Bra028830.1-P | Field mustard | cytosol | 67.14 | 66.51 |
| KRG96048 | Soybean | cytosol | 66.67 | 66.35 |
| CDY54608 | Canola | cytosol | 63.81 | 65.69 |
| CDY41571 | Canola | cytosol | 63.33 | 65.2 |
| AT3G09910.1 | Thale cress | cytosol | 63.33 | 64.88 |
| Solyc10g086310.1.1 | Tomato | cytosol | 63.81 | 64.11 |
| Bra029804.1-P | Field mustard | cytosol | 61.9 | 63.73 |
| PGSC0003DMT400049302 | Potato | cytosol | 65.24 | 63.72 |
| Zm00001d048393_P001 | Maize | plastid | 90.0 | 61.16 |
Protein Annotations
| MapMan:22.8.1.3 | Gene3D:3.40.50.300 | EntrezGene:4331607 | ProteinID:AAK98738.1 | ProteinID:ABF93960.1 | EMBL:AK061250 |
| ProteinID:BAF10868.1 | ProteinID:BAS82274.1 | ProteinID:EAZ25573.1 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0003924 | GO:GO:0005488 | GO:GO:0005525 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005794 | GO:GO:0016787 | EnsemblPlantsGene:Os03g0146000 | EnsemblPlants:Os03t0146000-01 | InterPro:P-loop_NTPase |
| PFAM:PF00071 | PRINTS:PR00449 | PFscan:PS51419 | PANTHER:PTHR24073 | PANTHER:PTHR24073:SF879 | UniProt:Q10RT8 |
| SMART:SM00173 | SMART:SM00174 | SMART:SM00175 | SMART:SM00176 | SMART:SM00177 | SUPFAM:SSF52540 |
| InterPro:Small_GTP-bd_dom | InterPro:Small_GTPase | TIGRFAMs:TIGR00231 | UniParc:UPI00000A3246 | RefSeq:XP_015633274.1 | : |
Description
small GTP-binding protein OsRab18B2, Ras-related protein RAB-18Similar to RAB1X. (Os03t0146000-01)
Coordinates
chr3:+:2553889..2559108
Molecular Weight (calculated)
23261.9 Da
IEP (calculated)
7.372
GRAVY (calculated)
-0.243
Length
210 amino acids
Sequence
(BLAST)
(BLAST)
001: MASSPASSYD CSFKILLIGD SAVGKSSLLV SFVSASHIDD EIAPTIGVDF KIKFLTVNGK KLKLTIWDTA GQERFRGITS SYYRGAHGII LVYDVTKRES
101: FTNLADVWAK EIELHSTNKE CIKMLVGNKV DKNEERMVTR EEGLAFAQES GCLFLESSAK TRENVEKCFE ELALKILEVP SLLEEGSSVV KRNSLKQKHE
201: NKAKNGGCCQ
101: FTNLADVWAK EIELHSTNKE CIKMLVGNKV DKNEERMVTR EEGLAFAQES GCLFLESSAK TRENVEKCFE ELALKILEVP SLLEEGSSVV KRNSLKQKHE
201: NKAKNGGCCQ
001: MGSSSGQSGY DLSFKILLIG DSGVGKSSLL VSFISSSVED LAPTIGVDFK IKQLTVGGKR LKLTIWDTAG QERFRTLTSS YYRGAQGIIL VYDVTRRETF
101: TNLVDVWGKE IELYSTNQEC VRMLVGNKVD RESERGVSRE EGIALAKELN CMFLECSART RQNVEQCFEE LALKIMEVPS LLEEGSSAVK RNILKQKPEH
201: QTNTQSGCCS
101: TNLVDVWGKE IELYSTNQEC VRMLVGNKVD RESERGVSRE EGIALAKELN CMFLECSART RQNVEQCFEE LALKIMEVPS LLEEGSSAVK RNILKQKPEH
201: QTNTQSGCCS
Arabidopsis Description
RABC2ARABC2A [Source:UniProtKB/TrEMBL;Acc:A0A178UJG3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.