Factsheet for Bra036934.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY14967	Canola	cytosol	99.06	99.06
CDY51571	Canola	cytosol	41.51	97.78
AT1G43890.1	Thale cress	cytosol	97.64	97.64
Bra034924.1-P	Field mustard	cytosol	96.7	96.7
Bra032196.1-P	Field mustard	cytosol	96.7	96.24
GSMUA_Achr10P...	Banana	cytosol	85.85	86.67
KRH43557	Soybean	cytosol	83.02	84.21
GSMUA_Achr7P03080_001	Banana	cytosol	83.02	83.81
KRH59573	Soybean	endoplasmic reticulum	82.08	83.25
EES13169	Sorghum	cytosol	83.02	81.86
TraesCS3A01G421700.1	Wheat	cytosol, golgi	81.6	81.22
HORVU2Hr1G127520.1	Barley	cytosol	82.08	80.56
HORVU2Hr1G127540.1	Barley	cytosol	82.08	80.56
KRH64034	Soybean	cytosol	78.3	80.19
TraesCS2D01G567100.1	Wheat	cytosol	82.08	80.18
TraesCS2B01G617000.1	Wheat	cytosol	82.08	80.18
TraesCSU01G137100.1	Wheat	cytosol, plastid	82.08	79.45
KRH53905	Soybean	cytosol	77.36	79.23
VIT_18s0001g15090.t01	Wine grape	plastid	84.91	75.95
Bra028830.1-P	Field mustard	cytosol	72.17	72.17
Bra009524.1-P	Field mustard	cytosol	70.75	71.43
Bra029804.1-P	Field mustard	cytosol	64.62	67.16
HORVU1Hr1G025450.1	Barley	endoplasmic reticulum	39.15	58.45
GSMUA_Achr5P15600_001	Banana	cytosol	39.15	53.9

Protein Annotations

MapMan:22.8.1.3	Gene3D:3.40.50.300	EnsemblPlantsGene:Bra036934	EnsemblPlants:Bra036934.1	EnsemblPlants:Bra036934.1-P	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0016787
UniProt:M4F774	InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449	PFscan:PS51419	PANTHER:PTHR24073
PANTHER:PTHR24073:SF874	SMART:SM00173	SMART:SM00174	SMART:SM00175	SMART:SM00176	SMART:SM00177
SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231	UniParc:UPI000253E687	SEG:seg

Description

AT1G43890 (E=1e-107) ATRAB18, RAB18-1, RABC1 | ATRAB18 (ARABIDOPSIS RAB GTPASE HOMOLOG B18); GTP binding

Coordinates

chrScaffold000123:+:86487..87803

Molecular Weight (calculated)

23408.8 Da

IEP (calculated)

6.546

GRAVY (calculated)

-0.256

Length

212 amino acids

Sequence
(BLAST)

001: MGSSSGQPEF DYLFKVLLIG DSGVGKSSLL LSFTSNTFDD LSPTIGVDFK VKYLTIGEKK LKLAIWDTAG QERFRTLTSS YYRGAQGIIM VYDVTRRDTF
101: TNLSDIWAKE IDLYSTNQDC IKMLVGNKVD KESERAVSKK EGIGVAREYG CLFLECSAKT RVNVEQCFEE LVLKILETPS LTAEGSSGGK KNIFKQNPAQ
201: TSNASSSYCC SS

Best Arabidopsis Sequence Match ( AT1G43890.3 )
(BLAST)

001: MGSSSGQPEF DYLFKVLLIG DSGVGKSSLL LSFTSNTFDD LSPTIGVDFK VKYLTIGEKK LKLAIWDTAG QERFRTLTSS YYRGAQGIIM VYDVTRRDTF
101: TNLSDIWAKE IDLYSTNQDC IKMLVGNKVD KESERAVSKK EGIDFAREYG CLFLECSAKT RVNVEQCFEE LVLKILETPS LTAEGSSGGK KNIFKQNPAQ
201: TTSTSSSYCC SS

Arabidopsis Description

RABC1Ras-related protein RABC1 [Source:UniProtKB/Swiss-Prot;Acc:O23657]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.