CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH53905	Soybean	cytosol	94.69	94.69
KRH59573	Soybean	endoplasmic reticulum	87.92	87.08
KRH43557	Soybean	cytosol	87.44	86.6
KRH18093	Soybean	endoplasmic reticulum	82.61	79.53
CDY14967	Canola	cytosol	81.16	79.25
AT1G43890.1	Thale cress	cytosol	81.16	79.25
KRH15908	Soybean	mitochondrion	81.64	78.97
Bra032196.1-P	Field mustard	cytosol	80.68	78.4
CDY43856	Canola	cytosol	80.68	78.4
Bra036934.1-P	Field mustard	cytosol	80.19	78.3
CDY35803	Canola	cytosol	80.19	78.3
CDY47787	Canola	cytosol	80.19	78.3
Bra034924.1-P	Field mustard	cytosol	79.71	77.83
CDY69246	Canola	cytosol	57.97	76.92
CDY51571	Canola	cytosol	31.4	72.22
VIT_18s0001g15090.t01	Wine grape	plastid	81.64	71.31
KRH32565	Soybean	extracellular	66.67	65.09
KRH19962	Soybean	cytosol	66.18	64.93
KRH67770	Soybean	endoplasmic reticulum	65.22	63.98
KRG96048	Soybean	cytosol	64.73	63.51
KRH34658	Soybean	cytosol	57.49	56.13
KRG92126	Soybean	endoplasmic reticulum	57.49	56.13
KRH55263	Soybean	cytosol	31.88	45.83

Protein Annotations

EntrezGene:100779729	MapMan:22.8.1.3	Gene3D:3.40.50.300	EMBL:ACUP02002737	EnsemblPlantsGene:GLYMA_04G212400	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005794	GO:GO:0016787	UniProt:I1JY15
EnsemblPlants:KRH64034	ProteinID:KRH64034	ProteinID:KRH64034.1	InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449
PFscan:PS51419	PANTHER:PTHR24073	PANTHER:PTHR24073:SF874	SMART:SM00173	SMART:SM00174	SMART:SM00175
SMART:SM00176	SMART:SM00177	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231
UniParc:UPI0002339800	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr4:-:48419674..48430039

Molecular Weight (calculated)

23209.8 Da

IEP (calculated)

5.470

GRAVY (calculated)

-0.273

Length

207 amino acids

Sequence
(BLAST)

001: MDSSSTQEFE YLFKLLMIGD SGVGKSSLLL CFTSDSFEDL SPTIGVDFKV KYLTMEGKKL KLAIWDTAGQ ERFRTLTSSY YRGAQGIIMA YDVTRRETFT
101: NLSEIWAKEI DLYSTNPECI KMLVGNKVDK EGDRVVTKKE GVDFARECGC LFIECSAKTR VNVQQCFEEL VLKILDTPSL LAEGSKGNKK NIFKDKPSQT
201: NATSSCC

Best Arabidopsis Sequence Match ( AT1G43890.1 )
(BLAST)

001: MGSSSGQPEF DYLFKVLLIG DSGVGKSSLL LSFTSNTFDD LSPTIGVDFK VKYLTIGEKK LKLAIWDTAG QERFRTLTSS YYRGAQGIIM VYDVTRRDTF
101: TNLSDIWAKE IDLYSTNQDC IKMLVGNKVD KESERAVSKK EGIDFAREYG CLFLECSAKT RVNVEQCFEE LVLKILETPS LTAEGSSGGK KNIFKQNPAQ
201: TTSTSSSYCC SS

Arabidopsis Description

RABC1Ras-related protein RABC1 [Source:UniProtKB/Swiss-Prot;Acc:O23657]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.