CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

nucleus 1
cytosol 4
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH43557	Soybean	cytosol	93.78	93.78
KRH64034	Soybean	cytosol	87.08	87.92
KRH53905	Soybean	cytosol	85.17	85.99
CDY14967	Canola	cytosol	84.21	83.02
AT1G43890.1	Thale cress	cytosol	84.21	83.02
KRH15908	Soybean	mitochondrion	84.21	82.24
Bra032196.1-P	Field mustard	cytosol	83.73	82.16
CDY43856	Canola	cytosol	83.73	82.16
Bra036934.1-P	Field mustard	cytosol	83.25	82.08
CDY35803	Canola	cytosol	83.25	82.08
KRH18093	Soybean	endoplasmic reticulum	84.21	81.86
Bra034924.1-P	Field mustard	cytosol	82.78	81.6
CDY47787	Canola	cytosol	82.78	81.6
CDY69246	Canola	cytosol	59.81	80.13
CDY51571	Canola	cytosol	32.54	75.56
VIT_18s0001g15090.t01	Wine grape	plastid	84.21	74.26
KRH32565	Soybean	extracellular	66.51	65.57
KRH19962	Soybean	cytosol	66.03	65.4
KRH67770	Soybean	endoplasmic reticulum	64.59	63.98
KRG96048	Soybean	cytosol	64.11	63.51
KRG92126	Soybean	endoplasmic reticulum	58.37	57.55
KRH34658	Soybean	cytosol	57.42	56.6
KRH55263	Soybean	cytosol	32.54	47.22

Protein Annotations

MapMan:22.8.1.3	Gene3D:3.40.50.300	EMBL:ACUP02003333	EnsemblPlantsGene:GLYMA_05G191800	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005794	GO:GO:0016787	UniProt:I1K4Z4	EnsemblPlants:KRH59573
ProteinID:KRH59573	ProteinID:KRH59573.1	ProteinID:KRH59574.1	InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449
PFscan:PS51419	PANTHER:PTHR24073	PANTHER:PTHR24073:SF874	SMART:SM00173	SMART:SM00174	SMART:SM00175
SMART:SM00176	SMART:SM00177	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231
UniParc:UPI000233A273	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr5:+:37743022..37746901

Molecular Weight (calculated)

23486.1 Da

IEP (calculated)

5.436

GRAVY (calculated)

-0.284

Length

209 amino acids

Sequence
(BLAST)

001: MDSSSEHQEF DYLFKLLMIG DSGVGKSSLL LSFTSDAFED LSPTIGVDFK VKYVTMGGKK LKLAIWDTAG QERFRTLTNS YYRGAQGIIM VYDVTRRDTF
101: TNLSEIWAKE IDLYSTNQDC IKMLVGNKVD KEGDRVVTKK EGIDFAREYG CLFIECSAKT RVNVQQCFEE LVLKILDTPS LIAEGSKGVK KNIFKERPPQ
201: SDASTSSCC

Best Arabidopsis Sequence Match ( AT1G43890.3 )
(BLAST)

001: MGSSSGQPEF DYLFKVLLIG DSGVGKSSLL LSFTSNTFDD LSPTIGVDFK VKYLTIGEKK LKLAIWDTAG QERFRTLTSS YYRGAQGIIM VYDVTRRDTF
101: TNLSDIWAKE IDLYSTNQDC IKMLVGNKVD KESERAVSKK EGIDFAREYG CLFLECSAKT RVNVEQCFEE LVLKILETPS LTAEGSSGGK KNIFKQNPAQ
201: TTSTSSSYCC SS

Arabidopsis Description

RABC1Ras-related protein RABC1 [Source:UniProtKB/Swiss-Prot;Acc:O23657]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.