CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY11028	Canola	cytosol	63.33	64.77
CDY14967	Canola	cytosol	100.0	42.45
Bra036934.1-P	Field mustard	cytosol	97.78	41.51
CDY47787	Canola	cytosol	97.78	41.51
AT1G43890.1	Thale cress	cytosol	96.67	41.04
CDY35803	Canola	cytosol	96.67	41.04
CDY43856	Canola	cytosol	94.44	39.91
GSMUA_Achr10P...	Banana	cytosol	85.56	36.67
GSMUA_Achr7P03080_001	Banana	cytosol	83.33	35.71
TraesCS3A01G421700.1	Wheat	cytosol, golgi	78.89	33.33
HORVU2Hr1G127540.1	Barley	cytosol	80.0	33.33
HORVU2Hr1G127520.1	Barley	cytosol	80.0	33.33
KRH43557	Soybean	cytosol	76.67	33.01
TraesCS2D01G567100.1	Wheat	cytosol	78.89	32.72
TraesCS2B01G617000.1	Wheat	cytosol	78.89	32.72
EES13169	Sorghum	cytosol	77.78	32.56
KRH59573	Soybean	endoplasmic reticulum	75.56	32.54
TraesCSU01G137100.1	Wheat	cytosol, plastid	78.89	32.42
VIT_18s0001g15090.t01	Wine grape	plastid	83.33	31.65
KRH53905	Soybean	cytosol	72.22	31.4
KRH64034	Soybean	cytosol	72.22	31.4
CDY10375	Canola	cytosol	63.33	27.14
CDY04887	Canola	cytosol	63.33	26.89
CDY44372	Canola	cytosol	63.33	26.89
CDX70301	Canola	cytosol	61.11	26.19
GSMUA_Achr5P15600_001	Banana	cytosol	43.33	25.32
CDY41571	Canola	cytosol	54.44	24.02
CDY54608	Canola	cytosol	53.33	23.53
CDY69246	Canola	cytosol	23.33	13.46
HORVU1Hr1G025450.1	Barley	endoplasmic reticulum	12.22	7.75

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	GO:A0A078INP8	UniProt:A0A078INP8	EnsemblPlants:CDY51571	ProteinID:CDY51571
ProteinID:CDY51571.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488
GO:GO:0005525	GO:GO:0005575	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0009987
GO:GO:0016020	GO:GO:0016787	EnsemblPlantsGene:GSBRNA2T00003759001	InterPro:P-loop_NTPase	PFAM:PF00071	PFscan:PS51421
PANTHER:PTHR24073	PANTHER:PTHR24073:SF874	SMART:SM00175	SUPFAM:SSF52540	InterPro:Small_GTPase	InterPro:Small_GTPase_Ras-type
UniParc:UPI0004EF11CE	SEG:seg	:	:	:	:

Description

BnaCnng21000DBnaCnng21000D protein [Source:UniProtKB/TrEMBL;Acc:A0A078INP8]

Coordinates

chrLK033006:+:82845..83577

Molecular Weight (calculated)

9817.6 Da

IEP (calculated)

6.448

GRAVY (calculated)

-0.417

Length

90 amino acids

Sequence
(BLAST)

1: MLVGNKVDKE SERAVSKKEG IDFAREYGCL FLECSAKTRV NVEQCFEELV LKILETPSLT AEGSSGGKKN IFKQNPAQTS NASSSYCCSS

Best Arabidopsis Sequence Match ( AT1G43890.1 )
(BLAST)

001: MGSSSGQPEF DYLFKVLLIG DSGVGKSSLL LSFTSNTFDD LSPTIGVDFK VKYLTIGEKK LKLAIWDTAG QERFRTLTSS YYRGAQGIIM VYDVTRRDTF
101: TNLSDIWAKE IDLYSTNQDC IKMLVGNKVD KESERAVSKK EGIDFAREYG CLFLECSAKT RVNVEQCFEE LVLKILETPS LTAEGSSGGK KNIFKQNPAQ
201: TTSTSSSYCC SS

Arabidopsis Description

RABC1Ras-related protein RABC1 [Source:UniProtKB/Swiss-Prot;Acc:O23657]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.