Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 4
- mitochondrion 3
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_AchrUn_... | Banana | cytosol | 48.7 | 61.48 |
| CDY51571 | Canola | cytosol | 25.32 | 43.33 |
| GSMUA_Achr7P03080_001 | Banana | cytosol | 55.84 | 40.95 |
| GSMUA_Achr10P... | Banana | cytosol | 54.55 | 40.0 |
| Bra036934.1-P | Field mustard | cytosol | 53.9 | 39.15 |
| CDY14967 | Canola | cytosol | 53.9 | 39.15 |
| CDY47787 | Canola | cytosol | 53.9 | 39.15 |
| AT1G43890.1 | Thale cress | cytosol | 53.9 | 39.15 |
| Solyc04g064510.2.1 | Tomato | cytosol | 52.6 | 38.76 |
| PGSC0003DMT400063864 | Potato | cytosol | 52.6 | 38.76 |
| Bra034924.1-P | Field mustard | cytosol | 53.25 | 38.68 |
| CDY35803 | Canola | cytosol | 53.25 | 38.68 |
| Bra032196.1-P | Field mustard | cytosol | 52.6 | 38.03 |
| CDY43856 | Canola | cytosol | 52.6 | 38.03 |
| CDY69246 | Canola | cytosol | 37.66 | 37.18 |
| GSMUA_Achr11P... | Banana | cytosol | 49.35 | 36.02 |
| KRH55263 | Soybean | cytosol | 33.12 | 35.42 |
| GSMUA_AchrUn_... | Banana | cytosol | 48.7 | 35.05 |
| VIT_00s1603g00010.t01 | Wine grape | cytosol | 12.99 | 33.33 |
| VIT_13s0019g05280.t01 | Wine grape | cytosol | 35.71 | 33.33 |
| HORVU1Hr1G025450.1 | Barley | endoplasmic reticulum | 29.22 | 31.69 |
| VIT_13s0047g01030.t01 | Wine grape | mitochondrion | 15.58 | 18.46 |
| VIT_15s0024g00940.t01 | Wine grape | cytosol, endoplasmic reticulum | 16.23 | 17.48 |
| GSMUA_Achr4P26700_001 | Banana | cytosol | 12.34 | 17.12 |
| GSMUA_Achr5P15590_001 | Banana | cytosol | 4.55 | 5.51 |
Protein Annotations
| Gene3D:3.40.50.300 | MapMan:35.1 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0003924 |
| GO:GO:0005488 | GO:GO:0005525 | GO:GO:0016787 | EnsemblPlantsGene:GSMUA_Achr5G15600_001 | EnsemblPlants:GSMUA_Achr5P15600_001 | EnsemblPlants:GSMUA_Achr5T15600_001 |
| UniProt:M0SYT9 | InterPro:P-loop_NTPase | PFAM:PF00071 | PRINTS:PR00449 | PFscan:PS51419 | PANTHER:PTHR24073 |
| PANTHER:PTHR24073:SF579 | SMART:SM00173 | SMART:SM00174 | SMART:SM00175 | SUPFAM:SSF52540 | InterPro:Small_GTP-bd_dom |
| InterPro:Small_GTPase | TIGRFAMs:TIGR00231 | UniParc:UPI0002967B4D | SEG:seg | : | : |
Description
Putative Ras-related protein Rab-18 [Source:GMGC_GENE;Acc:GSMUA_Achr5G15600_001]
Coordinates
chr5:+:11608632..11610247
Molecular Weight (calculated)
17445.8 Da
IEP (calculated)
9.215
GRAVY (calculated)
-0.666
Length
154 amino acids
Sequence
(BLAST)
(BLAST)
001: MTKNMYFVHV FAAGNERFRT LTTSYYRGAH GIIMVYDVTR PETFTHLTDT WTKEVEQHST NQDCIKILAG NKVDKEKERK VTKEEASALA NAKGYLFVEC
101: SAKTRQNVEK CFQDLAEKIL QVPNLVENAK NTSKPKPKPT QTATPKPNGC CTIQ
101: SAKTRQNVEK CFQDLAEKIL QVPNLVENAK NTSKPKPKPT QTATPKPNGC CTIQ
001: MGSSSGQSGY DLSFKILLIG DSGVGKSSLL VSFISSSVED LAPTIGVDFK IKQLTVGGKR LKLTIWDTAG QERFRTLTSS YYRGAQGIIL VYDVTRRETF
101: TNLVDVWGKE IELYSTNQEC VRMLVGNKVD RESERGVSRE EGIALAKELN CMFLECSART RQNVEQCFEE LALKIMEVPS LLEEGSSAVK RNILKQKPEH
201: QTNTQSGCCS
101: TNLVDVWGKE IELYSTNQEC VRMLVGNKVD RESERGVSRE EGIALAKELN CMFLECSART RQNVEQCFEE LALKIMEVPS LLEEGSSAVK RNILKQKPEH
201: QTNTQSGCCS
Arabidopsis Description
RABC2ARABC2A [Source:UniProtKB/TrEMBL;Acc:A0A178UJG3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.