Factsheet for Solyc04g064510.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400063864	Potato	cytosol	94.26	94.26
KRH15908	Soybean	mitochondrion	89.47	87.38
GSMUA_Achr7P03080_001	Banana	cytosol	87.08	86.67
GSMUA_Achr10P...	Banana	cytosol	86.12	85.71
KRH18093	Soybean	endoplasmic reticulum	86.6	84.19
TraesCS3A01G421700.1	Wheat	cytosol, golgi	85.65	84.04
EES13169	Sorghum	cytosol	84.69	82.33
TraesCS2B01G617000.1	Wheat	cytosol	84.69	81.57
TraesCS2D01G567100.1	Wheat	cytosol	84.69	81.57
HORVU2Hr1G127520.1	Barley	cytosol	84.21	81.48
HORVU2Hr1G127540.1	Barley	cytosol	84.21	81.48
TraesCSU01G137100.1	Wheat	cytosol, plastid	84.69	80.82
Solyc10g086310.1.1	Tomato	cytosol	69.38	69.38
Solyc09g008460.2.1	Tomato	plastid	67.46	65.28
HORVU1Hr1G025450.1	Barley	endoplasmic reticulum	41.15	60.56
Solyc11g008020.1.1	Tomato	cytosol	58.85	56.94
GSMUA_Achr5P15600_001	Banana	cytosol	38.76	52.6

Protein Annotations

MapMan:22.8.1.3	Gene3D:3.40.50.300	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924
GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005794	GO:GO:0016787	UniProt:K4BT42	InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449
PFscan:PS51419	PANTHER:PTHR24073	PANTHER:PTHR24073:SF874	SMART:SM00173	SMART:SM00174	SMART:SM00175
SMART:SM00176	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	EnsemblPlantsGene:Solyc04g064510.2	EnsemblPlants:Solyc04g064510.2.1
TIGRFAMs:TIGR00231	UniParc:UPI000276644B	:	:	:	:

Description

Ras-related protein RABC1 [Source:Projected from Arabidopsis thaliana (AT1G43890) UniProtKB/Swiss-Prot;Acc:O23657]

Coordinates

chr4:-:55670912..55675897

Molecular Weight (calculated)

23269.8 Da

IEP (calculated)

5.158

GRAVY (calculated)

-0.212

Length

209 amino acids

Sequence
(BLAST)

001: MEPSSSSPEF DYLFKLLLIG DSGVGKSSLL LSFTSDAFED LSPTIGVDFK VKHVTLGGKK LKLAIWDTAG QERFRTLTSS YYRGAQGIIM VYDVTRRDTF
101: TNLSDIWAKE IDLYSTNQEC IKMLVGNKVD KESERVVSKK EGIDFAREYG CLFIECSAKT RVNVEQCFEE LVLKILDTPS LLAEGSAGVR KNIFRQKPPE
201: SDASTSGCC

Best Arabidopsis Sequence Match ( AT1G43890.3 )
(BLAST)

001: MGSSSGQPEF DYLFKVLLIG DSGVGKSSLL LSFTSNTFDD LSPTIGVDFK VKYLTIGEKK LKLAIWDTAG QERFRTLTSS YYRGAQGIIM VYDVTRRDTF
101: TNLSDIWAKE IDLYSTNQDC IKMLVGNKVD KESERAVSKK EGIDFAREYG CLFLECSAKT RVNVEQCFEE LVLKILETPS LTAEGSSGGK KNIFKQNPAQ
201: TTSTSSSYCC SS

Arabidopsis Description

RABC1Ras-related protein RABC1 [Source:UniProtKB/Swiss-Prot;Acc:O23657]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.