CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY14967	Canola	cytosol	98.11	98.11
CDY51571	Canola	cytosol	41.51	97.78
AT1G43890.1	Thale cress	cytosol	96.7	96.7
CDY35803	Canola	cytosol	96.23	96.23
CDY43856	Canola	cytosol	96.23	95.77
CDY69246	Canola	cytosol	66.51	90.38
GSMUA_Achr10P...	Banana	cytosol	84.91	85.71
GSMUA_Achr7P03080_001	Banana	cytosol	83.02	83.81
KRH43557	Soybean	cytosol	82.08	83.25
KRH59573	Soybean	endoplasmic reticulum	81.6	82.78
EES13169	Sorghum	cytosol	83.02	81.86
TraesCS3A01G421700.1	Wheat	cytosol, golgi	82.08	81.69
TraesCS2D01G567100.1	Wheat	cytosol	82.55	80.65
TraesCS2B01G617000.1	Wheat	cytosol	82.55	80.65
KRH64034	Soybean	cytosol	78.3	80.19
HORVU2Hr1G127520.1	Barley	cytosol	81.6	80.09
HORVU2Hr1G127540.1	Barley	cytosol	81.6	80.09
TraesCSU01G137100.1	Wheat	cytosol, plastid	82.55	79.91
KRH53905	Soybean	cytosol	77.83	79.71
VIT_18s0001g15090.t01	Wine grape	plastid	85.38	76.37
CDY04887	Canola	cytosol	72.17	72.17
CDY44372	Canola	cytosol	71.7	71.7
CDY10375	Canola	cytosol	70.75	71.43
CDX70301	Canola	cytosol	70.75	71.43
CDY41571	Canola	cytosol	65.09	67.65
CDY54608	Canola	cytosol	64.15	66.67
CDY11028	Canola	cytosol	25.94	62.5
HORVU1Hr1G025450.1	Barley	endoplasmic reticulum	39.15	58.45
GSMUA_Achr5P15600_001	Banana	cytosol	39.15	53.9

Protein Annotations

MapMan:22.8.1.3	Gene3D:3.40.50.300	GO:A0A078ICD5	UniProt:A0A078ICD5	EnsemblPlants:CDY47787	ProteinID:CDY47787
ProteinID:CDY47787.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488
GO:GO:0005525	GO:GO:0016787	EnsemblPlantsGene:GSBRNA2T00088187001	InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449
PFscan:PS51419	PANTHER:PTHR24073	PANTHER:PTHR24073:SF874	SMART:SM00173	SMART:SM00174	SMART:SM00175
SMART:SM00176	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231	UniParc:UPI0004EC3CA0
SEG:seg	:	:	:	:	:

Description

BnaC06g00520DBnaC06g00520D protein [Source:UniProtKB/TrEMBL;Acc:A0A078ICD5]

Coordinates

chrLK032735:+:6372..8200

Molecular Weight (calculated)

23518.0 Da

IEP (calculated)

7.051

GRAVY (calculated)

-0.243

Length

212 amino acids

Sequence
(BLAST)

001: MGSPSGQPEF DYLFKVLLIG DSGVGKSSLL LSFTSNTFDD LSPTIGVDFK VKYLTIGEKK LKLAIWDTAG QERFRTLTSS YYRGAQGIIM VYDVTRRETF
101: TNLSDIWAKE IDLYSTNQDC IKMLVGNKVD KESERAVSKK EGIDFARVYG CLFLECSAKT RVNVEQCFEE LVLKILETPS LTAEGSSGGK KNIFKQNPAH
201: TSNASSSYCC SS

Best Arabidopsis Sequence Match ( AT1G43890.3 )
(BLAST)

001: MGSSSGQPEF DYLFKVLLIG DSGVGKSSLL LSFTSNTFDD LSPTIGVDFK VKYLTIGEKK LKLAIWDTAG QERFRTLTSS YYRGAQGIIM VYDVTRRDTF
101: TNLSDIWAKE IDLYSTNQDC IKMLVGNKVD KESERAVSKK EGIDFAREYG CLFLECSAKT RVNVEQCFEE LVLKILETPS LTAEGSSGGK KNIFKQNPAQ
201: TTSTSSSYCC SS

Arabidopsis Description

RABC1Ras-related protein RABC1 [Source:UniProtKB/Swiss-Prot;Acc:O23657]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.