Factsheet for VIT_15s0024g00940.t01

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, cytosol

Predictor Summary:

plastid 1
cytosol 3
mitochondrion 3
endoplasmic reticulum 4
golgi 3
nucleus 1
extracellular 2
vacuole 2
plasma membrane 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, endoplasmic reticulum
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	plastid
EpiLoc:	cytosol
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	endoplasmic reticulum, golgi, mitochondrion, nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	endoplasmic reticulum

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_00s1603g00010.t01	Wine grape	cytosol	33.57	80.0
HORVU1Hr1G025450.1	Barley	endoplasmic reticulum	29.37	29.58
VIT_08s0007g04740.t01	Wine grape	cytosol	34.97	23.7
VIT_13s0019g05280.t01	Wine grape	cytosol	25.87	22.42
EES13169	Sorghum	cytosol	32.17	21.4
TraesCS3A01G421700.1	Wheat	cytosol, golgi	31.47	21.13
TraesCS2B01G617000.1	Wheat	cytosol	31.47	20.74
TraesCS2D01G567100.1	Wheat	cytosol	31.47	20.74
TraesCSU01G137100.1	Wheat	cytosol, plastid	31.47	20.55
VIT_13s0047g01030.t01	Wine grape	mitochondrion	18.18	20.0
VIT_18s0001g15090.t01	Wine grape	plastid	32.17	19.41
VIT_13s0019g05190.t01	Wine grape	cytosol	25.87	17.45
KRH55263	Soybean	cytosol	17.48	17.36
GSMUA_Achr5P15600_001	Banana	cytosol	17.48	16.23

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	ProteinID:CBI39993	ProteinID:CBI39993.3	UniProt:D7UB69	EMBL:FN596748
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525
GO:GO:0016787	InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449	PFscan:PS51419	PANTHER:PTHR24073
PANTHER:PTHR24073:SF845	SMART:SM00175	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231
TMHMM:TMhelix	UniParc:UPI0001BE55A7	ArrayExpress:VIT_15s0024g00940	EnsemblPlantsGene:VIT_15s0024g00940	EnsemblPlants:VIT_15s0024g00940.t01	:

Description

No Description!

Coordinates

chr15:-:1828473..1831512

Molecular Weight (calculated)

16456.0 Da

IEP (calculated)

6.682

GRAVY (calculated)

0.109

Length

143 amino acids

Sequence
(BLAST)

001: MWQLGWQPIR LLTFRLWNMW LHAEITLTHG TNVLNFLLIL PHMIGTMTSA IVMSAIRLPL VAIGGLDDSY LESYISTIGV DFKIRTVEQD GKTIKLQIWD
101: TAGQERFRTI TSSYYRGAHG IIVVYDVTDQ ESLYAVRDKE AWH

Best Arabidopsis Sequence Match ( AT1G02130.1 )
(BLAST)

001: MNPEYDYLFK LLLIGDSGVG KSCLLLRFSD DSYVESYIST IGVDFKIRTV EQDGKTIKLQ IWDTAGQERF RTITSSYYRG AHGIIIVYDV TDEESFNNVK
101: QWLSEIDRYA SDNVNKLLVG NKSDLTENRA IPYETAKAFA DEIGIPFMET SAKDATNVEQ AFMAMSASIK ERMASQPAGN NARPPTVQIR GQPVAQKNGC
201: CST

Arabidopsis Description

RABD2ARas-related protein RABD2a [Source:UniProtKB/Swiss-Prot;Acc:P28188]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.