Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 4
- mitochondrion 2
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc11g008020.1.1 | Tomato | cytosol | 93.52 | 93.52 |
| KRH34658 | Soybean | cytosol | 68.52 | 69.81 |
| KRG92126 | Soybean | endoplasmic reticulum | 68.06 | 69.34 |
| VIT_13s0019g05190.t01 | Wine grape | cytosol | 68.06 | 69.34 |
| PGSC0003DMT400009952 | Potato | cytosol | 64.35 | 64.35 |
| PGSC0003DMT400049302 | Potato | cytosol | 63.43 | 63.72 |
| PGSC0003DMT400063864 | Potato | cytosol | 57.41 | 59.33 |
Protein Annotations
| MapMan:22.8.1.3 | Gene3D:3.40.50.300 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0003924 |
| GO:GO:0005488 | GO:GO:0005525 | GO:GO:0016787 | UniProt:M1D2E6 | InterPro:P-loop_NTPase | PFAM:PF00071 |
| EnsemblPlantsGene:PGSC0003DMG401031064 | PGSC:PGSC0003DMG401031064 | EnsemblPlants:PGSC0003DMT400079770 | PRINTS:PR00449 | PFscan:PS51419 | PANTHER:PTHR24073 |
| PANTHER:PTHR24073:SF643 | SMART:SM00173 | SMART:SM00174 | SMART:SM00175 | SMART:SM00176 | SUPFAM:SSF52540 |
| InterPro:Small_GTP-bd_dom | InterPro:Small_GTPase | TIGRFAMs:TIGR00231 | UniParc:UPI0002956C97 | : | : |
Description
AtRab GTP-binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG401031064]
Coordinates
chr11:-:3970210..3974047
Molecular Weight (calculated)
24218.2 Da
IEP (calculated)
9.592
GRAVY (calculated)
-0.272
Length
216 amino acids
Sequence
(BLAST)
(BLAST)
001: MGTRKNHNVG FSSSYDYSFK ILLVGDSGVG KSSLLLTFIS HHLFQDLSPT VGVDFKIRML TVGGKRLKLT IWDTAGQERF GALTSSYYRG AHGIILVYDV
101: TRRETFTNLS ETWAKDIKSY STNPECIKML VGNKVDRDSE RAVTREEGLA FAKEHNCLFL ECSARTRENV QLCFKDLTLK ILDVPSLVEK GSAVVKKPIL
201: KQKEVHKSQR SGNCCS
101: TRRETFTNLS ETWAKDIKSY STNPECIKML VGNKVDRDSE RAVTREEGLA FAKEHNCLFL ECSARTRENV QLCFKDLTLK ILDVPSLVEK GSAVVKKPIL
201: KQKEVHKSQR SGNCCS
001: MGSSSGQSGY DLSFKILLIG DSGVGKSSLL VSFISSSVED LAPTIGVDFK IKQLTVGGKR LKLTIWDTAG QERFRTLTSS YYRGAQGIIL VYDVTRRETF
101: TNLVDVWGKE IELYSTNQEC VRMLVGNKVD RESERGVSRE EGIALAKELN CMFLECSART RQNVEQCFEE LALKIMEVPS LLEEGSSAVK RNILKQKPEH
201: QTNTQSGCCS
101: TNLVDVWGKE IELYSTNQEC VRMLVGNKVD RESERGVSRE EGIALAKELN CMFLECSART RQNVEQCFEE LALKIMEVPS LLEEGSSAVK RNILKQKPEH
201: QTNTQSGCCS
Arabidopsis Description
RABC2ARABC2A [Source:UniProtKB/TrEMBL;Acc:A0A178UJG3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.