CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 5
plasma membrane 1
peroxisome 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG98502
KRG98507
KRH46360
KRH46364

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G55940.1	KRG98502	AT4G26630.1	25387881
AT3G55940.1	KRG98507	AT4G26630.1	25387881
AT3G55940.1	KRH46360	AT4G26630.1	25387881
AT3G55940.1	KRH46364	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH31148	Soybean	mitochondrion	95.78	95.78
KRH73190	Soybean	endoplasmic reticulum	77.7	76.67
KRH14945	Soybean	mitochondrion	77.03	76.0
VIT_13s0067g00900.t01	Wine grape	mitochondrion	75.17	75.04
Bra029697.1-P	Field mustard	mitochondrion	68.41	71.81
Bra040049.1-P	Field mustard	cytosol	65.03	71.03
PGSC0003DMT400016945	Potato	endoplasmic reticulum	59.12	70.85
Solyc05g052760.2.1	Tomato	plastid	69.76	70.84
CDY35983	Canola	mitochondrion	69.93	70.77
AT3G08510.1	Thale cress	mitochondrion	69.43	70.74
CDY27998	Canola	cytosol	65.2	70.7
PGSC0003DMT400069760	Potato	mitochondrion	69.76	70.6
CDY22153	Canola	mitochondrion	69.09	70.4
Bra007201.1-P	Field mustard	mitochondrion	64.7	70.15
CDY70294	Canola	mitochondrion	64.19	69.6
AT3G55940.1	Thale cress	mitochondrion	68.58	69.52
CDY01144	Canola	cytosol	54.73	68.94
CDY27254	Canola	mitochondrion	67.06	68.21
Solyc06g051620.2.1	Tomato	cytosol, mitochondrion	64.86	67.96
CDX72188	Canola	mitochondrion	66.55	67.7
CDY47356	Canola	mitochondrion	64.36	67.55
Bra032722.1-P	Field mustard	mitochondrion	63.85	67.14
GSMUA_Achr10P...	Banana	mitochondrion	53.72	61.63
KRH14947	Soybean	cytosol, mitochondrion	58.78	58.39
KRH72676	Soybean	cytosol, mitochondrion	36.99	58.24
KRG97734	Soybean	cytosol	54.73	58.17
HORVU1Hr1G014570.19	Barley	mitochondrion	56.42	57.29
TraesCS1A01G069300.1	Wheat	mitochondrion	56.25	56.92
KRH73189	Soybean	cytosol	57.94	56.79
TraesCS1D01G071800.3	Wheat	mitochondrion	56.08	56.08
KRH17039	Soybean	cytosol, mitochondrion	54.05	55.56
Os05t0127200-01	Rice	plasma membrane	55.24	54.68
OQU77319	Sorghum	mitochondrion	55.41	54.49
HORVU1Hr1G014580.9	Barley	mitochondrion	56.08	54.43
KRH31146	Soybean	nucleus	55.07	53.44
KRH14948	Soybean	cytosol	50.84	49.92
KRH31144	Soybean	cytosol	48.48	49.23
KRH73188	Soybean	cytosol	49.16	48.99
Zm00001d047447_P002	Maize	extracellular	54.05	48.12
KRG97735	Soybean	cytosol	49.83	47.43
KRH14952	Soybean	cytosol	26.69	40.62

Protein Annotations

KEGG:00562+3.1.4.11	KEGG:04070+3.1.4.11	Gene3D:1.10.238.10	EntrezGene:100784534	Gene3D:2.60.40.150	Gene3D:3.20.20.190
MapMan:5.7.2.3.2	EMBL:ACUP02010812	InterPro:C2_dom	InterPro:C2_domain_sf	ncoils:Coil	InterPro:EF-hand-dom_pair
EnsemblPlantsGene:GLYMA_18G027100	GO:GO:0003674	GO:GO:0003824	GO:GO:0004435	GO:GO:0004871	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0006629	GO:GO:0007154	GO:GO:0007165	GO:GO:0008081
GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016042	GO:GO:0016787
GO:GO:0035556	UniProt:I1MZ21	InterPro:IPR000008	InterPro:IPR000909	InterPro:IPR001711	InterPro:IPR017946
InterPro:IPR035892	EnsemblPlants:KRG97732	ProteinID:KRG97732	ProteinID:KRG97732.1	PFAM:PF00168	PFAM:PF00387
PFAM:PF00388	PFAM:PF09279	InterPro:PI-PLC_fam	InterPro:PLC-like_Pdiesterase_TIM-brl	InterPro:PLC_EF-hand-like	InterPro:PLipase_C_PInositol-sp_X_dom
InterPro:PLipase_C_Pinositol-sp_Y	PRINTS:PR00390	PFscan:PS50004	PFscan:PS50007	PFscan:PS50008	PANTHER:PTHR10336
PANTHER:PTHR10336:SF92	MetaCyc:PWY-6351	MetaCyc:PWY-6367	MetaCyc:PWY-7039	SMART:SM00148	SMART:SM00149
SMART:SM00239	SUPFAM:SSF47473	SUPFAM:SSF49562	SUPFAM:SSF51695	UniParc:UPI000233E12B	SEG:seg

Description

hypothetical protein

Coordinates

chr18:-:2034255..2038276

Molecular Weight (calculated)

67565.3 Da

IEP (calculated)

6.271

GRAVY (calculated)

-0.506

Length

592 amino acids

Sequence
(BLAST)

001: MPSKQTYSFC FCFRRRFRLP VSEAPPEIRT LFDRYSDQNG VMTATHLRSF LAEVQREDNA TEEEAQTIID GHKHLSIFHR RGLNLESFFN YLFSHHNNPP
101: LSPSIGVHQD MSSPLSHYFI YTGHNSYLTG NQLSSDCSDI PIINALQKGV RVIELDIWPN ESKDNVDVLH GRTLTSPVAL IKCLRSIKQH AFVASEYPVV
201: ITLEDHLTPD LQAKVAEMIT RTFGDILFAP TSKSLKEFPS PESLKRRVII STKPPKEYLE AKEVQETEEG PQQEKPADDE EAWGKEVPSL RGGTISDYKN
301: IEDDDVLDDE EDIDEAEKSR QDAADEYRRL IAIHAGKPKG GLTECLKVDP DKVRRLSLSE LQLEKAAETH GKEIVRFTQR NILRVYPKGT RITSTNYNPL
401: IGWMHGAQMV AFNMQGYGRS LWLMQGMFKA NGGCGYVKKP DFLLKVGQNN EVFDPKAHLP VKTTLKVTIY MGEGWFHDFK HTHFDKFSPP DFYARVGIAG
501: VPNDTVMKKT EKVEDNWSPS WNQVFEFPLA VPELALLRVE VHEYDMSEKD DFGGQTCLPV WELRSGIRAV PLYSRNGDKY ANVKLLMRFE FI

Best Arabidopsis Sequence Match ( AT3G08510.1 )
(BLAST)

001: MSKQTYKVCF CFRRRFRYTA SEAPREIKTI FEKYSENGVM TVDHLHRFLI DVQKQDKATR EDAQSIINSA SSLLHRNGLH LDAFFKYLFG DNNPPLALHK
101: VHHDMDAPIS HYFIFTGHNS YLTGNQLSSD CSEVPIIDAL KKGVRVIELD IWPNSNKDDI DVLHGMTLTT PVGLIKCLKA IRAHAFDVSD YPVVVTLEDH
201: LTPDLQSKVA EMVTEIFGEI LFTPPVGESL KEFPSPNSLK RRIIISTKPP KEYKEGKDVE VVQKGKDLGD EEVWGREVPS FIQRNKSEAK DDLDGNDDDD
301: DDDDEDKSKI NAPPQYKHLI AIHAGKPKGG ITECLKVDPD KVRRLSLSEE QLEKAAEKYA KQIVRFTQHN LLRIYPKGTR VTSSNYNPLV GWSHGAQMVA
401: FNMQGYGRSL WLMQGMFRAN GGCGYIKKPD LLLKSGSDSD IFDPKATLPV KTTLRVTVYM GEGWYFDFRH THFDQYSPPD FYTRVGIAGV PGDTVMKKTK
501: TLEDNWIPAW DEVFEFPLTV PELALLRLEV HEYDMSEKDD FGGQTCLPVW ELSEGIRAFP LHSRKGEKYK SVKLLVKVEF V

Arabidopsis Description

PLC2Phosphoinositide phospholipase C [Source:UniProtKB/TrEMBL;Acc:A0A178VDK7]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.