Factsheet for PGSC0003DMT400069760

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 6
plasma membrane 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400037344
PGSC0003DMT400057390

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G55940.1	PGSC0003DMT400037344	AT4G26630.1	25387881
AT3G55940.1	PGSC0003DMT400057390	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g052760.2.1	Tomato	plastid	96.58	96.91
PGSC0003DMT400016945	Potato	endoplasmic reticulum	63.76	75.51
VIT_13s0067g00900.t01	Wine grape	mitochondrion	76.07	75.04
Bra029697.1-P	Field mustard	mitochondrion	67.86	70.39
KRG97732	Soybean	mitochondrion	70.6	69.76
KRH31148	Soybean	mitochondrion	70.43	69.59
AT3G08510.1	Thale cress	mitochondrion	68.72	69.19
CDY35983	Canola	mitochondrion	68.89	68.89
CDY22153	Canola	mitochondrion	68.03	68.5
CDY27998	Canola	cytosol	63.93	68.5
Bra040049.1-P	Field mustard	cytosol	63.25	68.27
KRH73190	Soybean	endoplasmic reticulum	69.91	68.17
KRH14945	Soybean	mitochondrion	69.74	68.0
CDY01144	Canola	cytosol	54.53	67.87
AT3G55940.1	Thale cress	mitochondrion	67.69	67.81
Bra007201.1-P	Field mustard	mitochondrion	62.91	67.4
CDY47356	Canola	mitochondrion	64.79	67.2
Bra032722.1-P	Field mustard	mitochondrion	64.44	66.96
CDY70294	Canola	mitochondrion	62.39	66.85
CDY27254	Canola	mitochondrion	65.13	65.46
CDX72188	Canola	mitochondrion	64.62	64.95
PGSC0003DMT400049368	Potato	cytosol	65.13	63.93
PGSC0003DMT400016940	Potato	cytosol, mitochondrion	59.32	58.71
GSMUA_Achr10P...	Banana	mitochondrion	51.62	58.53
HORVU1Hr1G014570.19	Barley	mitochondrion	55.9	56.09
PGSC0003DMT400078046	Potato	cytosol	42.05	55.66
TraesCS1A01G069300.1	Wheat	mitochondrion	55.21	55.21
TraesCS1D01G071800.3	Wheat	mitochondrion	54.87	54.22
Os05t0127200-01	Rice	plasma membrane	55.21	54.01
OQU77319	Sorghum	mitochondrion	55.56	53.99
HORVU1Hr1G014580.9	Barley	mitochondrion	55.21	52.95
Zm00001d047447_P002	Maize	extracellular	54.36	47.82
PGSC0003DMT400031174	Potato	cytosol, mitochondrion	57.61	38.12

Protein Annotations

KEGG:00562+3.1.4.11	KEGG:04070+3.1.4.11	Gene3D:1.10.238.10	Gene3D:2.60.40.150	Gene3D:3.20.20.190	MapMan:5.7.2.3.2
InterPro:C2_dom	InterPro:C2_domain_sf	ProteinID:CAA63954	ProteinID:CAA63954.1	InterPro:EF-hand-dom_pair	GO:GO:0003674
GO:GO:0003824	GO:GO:0004435	GO:GO:0004871	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0006629	GO:GO:0007154	GO:GO:0007165	GO:GO:0008081	GO:GO:0008150	GO:GO:0008152
GO:GO:0009056	GO:GO:0009987	GO:GO:0016042	GO:GO:0016787	GO:GO:0035556	InterPro:IPR000008
InterPro:IPR000909	InterPro:IPR001711	InterPro:IPR017946	InterPro:IPR035892	UniProt:M1CL36	PFAM:PF00168
PFAM:PF00387	PFAM:PF00388	PFAM:PF09279	EnsemblPlantsGene:PGSC0003DMG400027130	PGSC:PGSC0003DMG400027130	EnsemblPlants:PGSC0003DMT400069760
InterPro:PI-PLC_fam	InterPro:PLC-like_Pdiesterase_TIM-brl	InterPro:PLC_EF-hand-like	InterPro:PLipase_C_PInositol-sp_X_dom	InterPro:PLipase_C_Pinositol-sp_Y	PRINTS:PR00390
PFscan:PS50004	PFscan:PS50007	PFscan:PS50008	PANTHER:PTHR10336	PANTHER:PTHR10336:SF92	SMART:SM00148
SMART:SM00149	SMART:SM00239	SUPFAM:SSF47473	SUPFAM:SSF49562	SUPFAM:SSF51695	UniParc:UPI000295CCB1
EMBL:X94289	SEG:seg	:	:	:	:

Description

Phosphoinositide-specific phospholipase C [Source:PGSC_GENE;Acc:PGSC0003DMG400027130]

Coordinates

chr5:+:48052466..48057779

Molecular Weight (calculated)

66557.0 Da

IEP (calculated)

6.095

GRAVY (calculated)

-0.450

Length

585 amino acids

Sequence
(BLAST)

001: MSKQSYRVCF CFRRRFRVLA AEAPADVKNL FNRYSDNGVM SVENLHRFLI EVQKEENATL EDAHAIMNNL HDLKILNIFH RRGLHLDAFF KYLFADINPP
101: LNSKLGIHQD MNAPLSHYFI YTGHNSYLTG NQLSSDCSDV PIIQALHRGV RVIELDIWPN SAKDDVEVLH GGTLTTPVAL IKCLKSIKEH AFTVSEYPVV
201: ITLEDHLTTD LQAKTAEMIT QTFGDMLFSS DSCLKEFPSP ESLKRRVLIS TKPPKEYLQA KEVNETGATK GTDQTDTEAW GREVSDIKAR YNDKDDSDEG
301: EADDSDEEDP TSQQNTAPEY KRLIAIHAGK GKGGLSDWLR VDPDKVRRLS LSEQELGKAV VTHGKEIIRF TQRNILRIYP KGIRFDSSNY NPFNAWTHGA
401: QMVAFNMQGY GRSLWLMHGM FRGNGGCGYV KKPDILLKAG PNNEVFDPEA NLPVKTTLKV TVFMGEGWYY DFEHTHFDAY SPPDFYARIG IAGVDADIVM
501: KKTKTLEDNW IPTWDEQFEF PLTVPELALL RVEVHEYDMS EKDDFAGQTC LPVSELRQGI RAVPLHSRKG EKYNSVKLLL RFEFI

Best Arabidopsis Sequence Match ( AT3G08510.1 )
(BLAST)

001: MSKQTYKVCF CFRRRFRYTA SEAPREIKTI FEKYSENGVM TVDHLHRFLI DVQKQDKATR EDAQSIINSA SSLLHRNGLH LDAFFKYLFG DNNPPLALHK
101: VHHDMDAPIS HYFIFTGHNS YLTGNQLSSD CSEVPIIDAL KKGVRVIELD IWPNSNKDDI DVLHGMTLTT PVGLIKCLKA IRAHAFDVSD YPVVVTLEDH
201: LTPDLQSKVA EMVTEIFGEI LFTPPVGESL KEFPSPNSLK RRIIISTKPP KEYKEGKDVE VVQKGKDLGD EEVWGREVPS FIQRNKSEAK DDLDGNDDDD
301: DDDDEDKSKI NAPPQYKHLI AIHAGKPKGG ITECLKVDPD KVRRLSLSEE QLEKAAEKYA KQIVRFTQHN LLRIYPKGTR VTSSNYNPLV GWSHGAQMVA
401: FNMQGYGRSL WLMQGMFRAN GGCGYIKKPD LLLKSGSDSD IFDPKATLPV KTTLRVTVYM GEGWYFDFRH THFDQYSPPD FYTRVGIAGV PGDTVMKKTK
501: TLEDNWIPAW DEVFEFPLTV PELALLRLEV HEYDMSEKDD FGGQTCLPVW ELSEGIRAFP LHSRKGEKYK SVKLLVKVEF V

Arabidopsis Description

PLC2Phosphoinositide phospholipase C [Source:UniProtKB/TrEMBL;Acc:A0A178VDK7]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.