Factsheet for Solyc05g052760.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 1
mitochondrion 6
plasma membrane 1
cytosol 1

Predictors

GFP

MS/MS

Papers

plastid: 22908117
plastid: 26371478
nucleus: 28394025
endoplasmic reticulum: 29145071

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

msms PMID: 29145071 doi

P Ibort, H Imai, M Uemura, R Aroca

Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (EEZ-CSIC), Profesor Albareda 1, 18008 Granada, Spain. Electronic address: pablo.ibort@eez.csic.es., Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (EEZ-CSIC), Profesor Albareda 1, 18008 Granada, Spain. Electronic address: raroca@eez.csic.es., United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate 020-8550, Japan; Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, 3-18-8 Ueda, Morioka, Iwate 020-8550, Japan. Electronic address: u0414004@iwate-u.ac.jp., United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate 020-8550, Japan; Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, 3-18-8 Ueda, Morioka, Iwate 020-8550, Japan. Electronic address: uemura@iwate-u.ac.jp.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc07g065490.2.1
Solyc10g006000.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G55940.1	Solyc07g065490.2.1	AT4G26630.1	25387881
AT3G55940.1	Solyc10g006000.2.1	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400069760	Potato	mitochondrion	96.91	96.58
VIT_13s0067g00900.t01	Wine grape	mitochondrion	77.19	75.89
Solyc06g051620.2.1	Tomato	cytosol, mitochondrion	70.33	72.57
Bra029697.1-P	Field mustard	mitochondrion	68.1	70.39
KRH31148	Soybean	mitochondrion	70.84	69.76
KRG97732	Soybean	mitochondrion	70.84	69.76
AT3G08510.1	Thale cress	mitochondrion	68.95	69.19
CDY35983	Canola	mitochondrion	69.3	69.06
CDY27998	Canola	cytosol	64.32	68.68
CDY22153	Canola	mitochondrion	68.27	68.5
KRH73190	Soybean	endoplasmic reticulum	70.5	68.5
KRH14945	Soybean	mitochondrion	70.33	68.33
CDY01144	Canola	cytosol	55.06	68.3
Bra040049.1-P	Field mustard	cytosol	63.46	68.27
AT3G55940.1	Thale cress	mitochondrion	68.1	67.98
CDY47356	Canola	mitochondrion	65.52	67.73
Bra007201.1-P	Field mustard	mitochondrion	63.29	67.58
Bra032722.1-P	Field mustard	mitochondrion	65.18	67.5
CDY70294	Canola	mitochondrion	62.78	67.03
CDY27254	Canola	mitochondrion	65.69	65.81
Solyc06g007120.2.1	Tomato	nucleus	66.04	65.59
CDX72188	Canola	mitochondrion	65.18	65.29
Solyc10g076710.1.1	Tomato	cytosol	64.49	62.56
GSMUA_Achr10P...	Banana	mitochondrion	52.66	59.5
Solyc06g051630.2.1	Tomato	cytosol, mitochondrion	60.21	59.19
HORVU1Hr1G014570.19	Barley	mitochondrion	56.26	56.26
TraesCS1A01G069300.1	Wheat	mitochondrion	55.57	55.38
TraesCS1D01G071800.3	Wheat	mitochondrion	55.23	54.39
Solyc06g082000.2.1	Tomato	cytosol	52.66	54.24
Os05t0127200-01	Rice	plasma membrane	55.4	54.01
OQU77319	Sorghum	mitochondrion	55.75	53.99
HORVU1Hr1G014580.9	Barley	mitochondrion	55.57	53.11
Zm00001d047447_P002	Maize	extracellular	54.72	47.97
Solyc03g096070.2.1	Tomato	cytosol, mitochondrion	57.8	38.12

Protein Annotations

KEGG:00562+3.1.4.11	KEGG:04070+3.1.4.11	Gene3D:1.10.238.10	Gene3D:2.60.40.150	Gene3D:3.20.20.190	MapMan:5.7.2.3.2
InterPro:C2_dom	InterPro:C2_domain_sf	InterPro:EF-hand-dom_pair	GO:GO:0003674	GO:GO:0003824	GO:GO:0004435
GO:GO:0004871	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006629	GO:GO:0007154
GO:GO:0007165	GO:GO:0008081	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987
GO:GO:0016042	GO:GO:0016787	GO:GO:0035556	InterPro:IPR000008	InterPro:IPR000909	InterPro:IPR001711
InterPro:IPR017946	InterPro:IPR035892	UniProt:K4C1V6	PFAM:PF00168	PFAM:PF00387	PFAM:PF00388
PFAM:PF09279	InterPro:PI-PLC_fam	InterPro:PLC-like_Pdiesterase_TIM-brl	InterPro:PLC_EF-hand-like	InterPro:PLipase_C_PInositol-sp_X_dom	InterPro:PLipase_C_Pinositol-sp_Y
PRINTS:PR00390	PFscan:PS50004	PFscan:PS50007	PFscan:PS50008	PANTHER:PTHR10336	PANTHER:PTHR10336:SF92
SMART:SM00148	SMART:SM00149	SMART:SM00239	SUPFAM:SSF47473	SUPFAM:SSF49562	SUPFAM:SSF51695
EnsemblPlantsGene:Solyc05g052760.2	EnsemblPlants:Solyc05g052760.2.1	UniParc:UPI0002765F14	SEG:seg	:	:

Description

Phosphoinositide phospholipase C [Source:UniProtKB/TrEMBL;Acc:K4C1V6]

Coordinates

chr5:+:62953346..62958339

Molecular Weight (calculated)

66281.7 Da

IEP (calculated)

6.268

GRAVY (calculated)

-0.421

Length

583 amino acids

Sequence
(BLAST)

001: MSTQTYRVCF CFRRRFRVVA AEAPADVKNL FNRYSDNGVM SADNLHRFLI EVQKEENATL EDAHAIMNNL HDLKILNIFH RRSLHLDAFF KYLFADINPP
101: LNSKLGIHQD MNAPLSHYFI YTGHNSYLTG NQLSSDCSDV PIIQALHRGV RVIELDIWPN SAKDDVEVLH GGTLTTPVAL IKCLKSIKEH AFAVSEYPVV
201: ITLEDHLTTA LQAKTAEMIT QTFGDMLFTS DSCLKEFPSP ESLKRRVLIS TKPPKEYLQA KEVKETGATK GTDDTEAWGR EVSDIKARYN DKYDSDEGEA
301: DDDDEEDPTS QQNTAPEYKR LIAIHAGKGK GGLSDWLRVD PDKVRRLSLS EQELGKAVVT HGKEIIRFTQ RNILRIYPKG IRFDSSNYNP FNAWTHGAQM
401: VAFNMQGYGR SLWLMHGMFR ANGGCGYVKK PDILLKAGPS NQVFDPEASL PVKTTLKVTV FMGEGWYYDF EHTHFDAYSP PDFYARIGIA GVDADIVMKK
501: TKTLEDNWIP TWDEQFEFPL TVPELALLRV EVHEYDMSEK DDFAGQTCLP VSELRQGIRA VPLHSRKGDK YNSVKLLMRF EFI

Best Arabidopsis Sequence Match ( AT3G08510.1 )
(BLAST)

001: MSKQTYKVCF CFRRRFRYTA SEAPREIKTI FEKYSENGVM TVDHLHRFLI DVQKQDKATR EDAQSIINSA SSLLHRNGLH LDAFFKYLFG DNNPPLALHK
101: VHHDMDAPIS HYFIFTGHNS YLTGNQLSSD CSEVPIIDAL KKGVRVIELD IWPNSNKDDI DVLHGMTLTT PVGLIKCLKA IRAHAFDVSD YPVVVTLEDH
201: LTPDLQSKVA EMVTEIFGEI LFTPPVGESL KEFPSPNSLK RRIIISTKPP KEYKEGKDVE VVQKGKDLGD EEVWGREVPS FIQRNKSEAK DDLDGNDDDD
301: DDDDEDKSKI NAPPQYKHLI AIHAGKPKGG ITECLKVDPD KVRRLSLSEE QLEKAAEKYA KQIVRFTQHN LLRIYPKGTR VTSSNYNPLV GWSHGAQMVA
401: FNMQGYGRSL WLMQGMFRAN GGCGYIKKPD LLLKSGSDSD IFDPKATLPV KTTLRVTVYM GEGWYFDFRH THFDQYSPPD FYTRVGIAGV PGDTVMKKTK
501: TLEDNWIPAW DEVFEFPLTV PELALLRLEV HEYDMSEKDD FGGQTCLPVW ELSEGIRAFP LHSRKGEKYK SVKLLVKVEF V

Arabidopsis Description

PLC2Phosphoinositide phospholipase C [Source:UniProtKB/TrEMBL;Acc:A0A178VDK7]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.