CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 1
mitochondrion 5
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX89318
CDX94304
CDX97358

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G55940.1	CDX89318	AT4G26630.1	25387881
AT3G55940.1	CDX94304	AT4G26630.1	25387881
AT3G55940.1	CDX97358	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra032722.1-P	Field mustard	mitochondrion	98.76	98.93
CDY01144	Canola	cytosol	79.79	95.74
CDY70294	Canola	mitochondrion	76.77	79.3
CDY27254	Canola	mitochondrion	79.96	77.49
CDX72188	Canola	mitochondrion	79.79	77.32
AT3G55940.1	Thale cress	mitochondrion	79.96	77.23
CDY27998	Canola	cytosol	72.16	74.54
CDY22153	Canola	mitochondrion	75.71	73.49
CDY35983	Canola	mitochondrion	76.06	73.33
PGSC0003DMT400016945	Potato	endoplasmic reticulum	57.98	66.19
VIT_13s0067g00900.t01	Wine grape	mitochondrion	69.15	65.77
Solyc05g052760.2.1	Tomato	plastid	67.73	65.52
PGSC0003DMT400069760	Potato	mitochondrion	67.2	64.79
KRH31148	Soybean	mitochondrion	67.73	64.53
KRG97732	Soybean	mitochondrion	67.55	64.36
KRH14945	Soybean	mitochondrion	67.55	63.5
KRH73190	Soybean	endoplasmic reticulum	67.2	63.17
Solyc06g051620.2.1	Tomato	cytosol, mitochondrion	62.77	62.65
CDY71544	Canola	cytosol	51.06	59.14
CDY69947	Canola	cytosol	21.81	58.85
GSMUA_Achr10P...	Banana	mitochondrion	52.48	57.36
CDY52122	Canola	cytosol, mitochondrion	56.56	54.16
CDY65008	Canola	cytosol	33.51	54.15
CDX80341	Canola	mitochondrion	56.21	53.73
CDY32691	Canola	cytosol	56.38	53.54
CDY70829	Canola	cytosol	47.52	53.39
CDY60344	Canola	cytosol	56.21	52.83
CDY61706	Canola	cytosol	57.09	52.79
CDY07057	Canola	cytosol	57.09	52.79
CDY07623	Canola	cytosol	55.67	52.77
CDX74806	Canola	cytosol	55.67	52.33
CDY20520	Canola	cytosol	56.21	52.14
HORVU1Hr1G014570.19	Barley	mitochondrion	53.72	51.97
CDY52120	Canola	cytosol, mitochondrion	51.42	51.88
TraesCS1A01G069300.1	Wheat	mitochondrion	53.19	51.28
CDY32694	Canola	cytosol	47.87	51.23
CDX80344	Canola	cytosol	50.71	51.16
CDY02827	Canola	cytosol	47.52	50.85
TraesCS1D01G071800.3	Wheat	mitochondrion	53.01	50.51
OQU77319	Sorghum	mitochondrion	53.9	50.5
Os05t0127200-01	Rice	plasma membrane	53.37	50.33
CDY71238	Canola	cytosol	35.99	50.12
CDY52121	Canola	cytosol	51.95	49.75
CDX80342	Canola	cytosol	51.77	49.58
HORVU1Hr1G014580.9	Barley	mitochondrion	53.55	49.51
CDX71156	Canola	cytosol, mitochondrion	52.84	48.77
CDY68902	Canola	cytosol	25.0	48.62
CDY61028	Canola	cytosol, mitochondrion	52.66	48.61
CDX75008	Canola	cytosol	13.65	44.51
Zm00001d047447_P002	Maize	extracellular	52.13	44.21
CDY33201	Canola	cytosol	9.57	42.19
CDY26989	Canola	cytosol, plastid	11.7	33.33
CDY26990	Canola	cytosol	4.43	17.36

Protein Annotations

KEGG:00562+3.1.4.11	KEGG:04070+3.1.4.11	Gene3D:1.10.238.10	Gene3D:2.60.40.150	Gene3D:3.20.20.190	MapMan:5.7.2.3.2
GO:A0A078IBZ2	UniProt:A0A078IBZ2	InterPro:C2_dom	InterPro:C2_domain_sf	EnsemblPlants:CDY47356	ProteinID:CDY47356
ProteinID:CDY47356.1	InterPro:EF-hand-dom_pair	GO:GO:0003674	GO:GO:0003824	GO:GO:0004435	GO:GO:0004871
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006629	GO:GO:0007154	GO:GO:0007165
GO:GO:0008081	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016042
GO:GO:0016787	GO:GO:0035556	EnsemblPlantsGene:GSBRNA2T00087236001	InterPro:IPR000008	InterPro:IPR000909	InterPro:IPR001711
InterPro:IPR017946	InterPro:IPR035892	PFAM:PF00168	PFAM:PF00387	PFAM:PF00388	PFAM:PF09279
InterPro:PI-PLC_fam	InterPro:PLC-like_Pdiesterase_TIM-brl	InterPro:PLC_EF-hand-like	InterPro:PLipase_C_PInositol-sp_X_dom	InterPro:PLipase_C_Pinositol-sp_Y	PRINTS:PR00390
PFscan:PS50004	PFscan:PS50007	PFscan:PS50008	PANTHER:PTHR10336	PANTHER:PTHR10336:SF92	MetaCyc:PWY-6351
MetaCyc:PWY-6367	MetaCyc:PWY-7039	SMART:SM00148	SMART:SM00149	SMART:SM00239	SUPFAM:SSF47473
SUPFAM:SSF49562	SUPFAM:SSF51695	UniParc:UPI0004EF1C93	SEG:seg	:	:

Description

BnaCnng14930DPhosphoinositide phospholipase C [Source:UniProtKB/TrEMBL;Acc:A0A078IBZ2]

Coordinates

chrLK032712:-:1697..4492

Molecular Weight (calculated)

63753.7 Da

IEP (calculated)

5.083

GRAVY (calculated)

-0.413

Length

564 amino acids

Sequence
(BLAST)

001: MSNQTYRFGF FRRKYHHAAS VAPPEVKILF ENYSEKGVMS VDHLLRFLTD VQKQDKATRE EAQAIVNASS SLLHRNCLHL DNFFKYLFGV DNSPIASHAE
101: VHQDMDDPLS HYFIFTGHNS YLTGNQLSSD CSEVPIIEAL QKGVKVIELD LWPNSDEDGI DVVHGRTLTS PVELIKCLRA IKAHAFDVSD YPVVVTLEDH
201: LTPQLQAKVA EMLTETFGDM LFAPPPGECL KELPSPEFLK KRILISTKPP KEYKESKHEH VVNKGNNISD GGDKNVSEGD EDEDDDEDDE VDQVTKSAAP
301: EYKHLIAIQA GKPKGGMTEC LKVDPDKVRR LSLSEEQLED ASEKYGTQIV RFTQQNVLRI YPKGTRIMSS NYDPLVGWSH GAQMVAFNMQ GQGKSLWIMR
401: GMFRANGGCG YVKKPDILLN NNAVFDPQAS LPVKTTLRVT IYMGEGWYDD FPRTHFDSYS PPDFYARVGI AGVPVDTVMK KTKTLEDDWI PAWEEVFEFP
501: LTVPQLALLR IEVLDYDMSE KDDFGGQTCL PVWELRQGIR AVPLHNEDGV KCRSVKLLVR FEFV

Best Arabidopsis Sequence Match ( AT3G08510.1 )
(BLAST)

001: MSKQTYKVCF CFRRRFRYTA SEAPREIKTI FEKYSENGVM TVDHLHRFLI DVQKQDKATR EDAQSIINSA SSLLHRNGLH LDAFFKYLFG DNNPPLALHK
101: VHHDMDAPIS HYFIFTGHNS YLTGNQLSSD CSEVPIIDAL KKGVRVIELD IWPNSNKDDI DVLHGMTLTT PVGLIKCLKA IRAHAFDVSD YPVVVTLEDH
201: LTPDLQSKVA EMVTEIFGEI LFTPPVGESL KEFPSPNSLK RRIIISTKPP KEYKEGKDVE VVQKGKDLGD EEVWGREVPS FIQRNKSEAK DDLDGNDDDD
301: DDDDEDKSKI NAPPQYKHLI AIHAGKPKGG ITECLKVDPD KVRRLSLSEE QLEKAAEKYA KQIVRFTQHN LLRIYPKGTR VTSSNYNPLV GWSHGAQMVA
401: FNMQGYGRSL WLMQGMFRAN GGCGYIKKPD LLLKSGSDSD IFDPKATLPV KTTLRVTVYM GEGWYFDFRH THFDQYSPPD FYTRVGIAGV PGDTVMKKTK
501: TLEDNWIPAW DEVFEFPLTV PELALLRLEV HEYDMSEKDD FGGQTCLPVW ELSEGIRAFP LHSRKGEKYK SVKLLVKVEF V

Arabidopsis Description

PLC2Phosphoinositide phospholipase C [Source:UniProtKB/TrEMBL;Acc:A0A178VDK7]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.