CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

nucleus 1
mitochondrion 4
cytosol 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	mitochondrion
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY61028	Canola	cytosol, mitochondrion	95.42	95.42
CDY52120	Canola	cytosol, mitochondrion	81.34	88.91
CDY71238	Canola	cytosol	57.61	86.91
CDY32694	Canola	cytosol	74.63	86.53
CDY02827	Canola	cytosol	74.63	86.53
CDX80344	Canola	cytosol	78.23	85.51
AT5G58670.1	Thale cress	cytosol	75.78	82.53
CDY68902	Canola	cytosol	31.1	65.52
CDY70829	Canola	cytosol	52.86	64.34
CDY65008	Canola	cytosol	34.53	60.46
KRH72676	Soybean	cytosol, mitochondrion	34.7	56.38
CDY01144	Canola	cytosol	42.88	55.74
CDY70294	Canola	mitochondrion	47.79	53.48
CDY47356	Canola	mitochondrion	48.77	52.84
CDY69947	Canola	cytosol	18.0	52.63
PGSC0003DMT400078046	Potato	cytosol	37.81	52.26
KRH17039	Soybean	cytosol, mitochondrion	49.26	52.26
CDY71544	Canola	cytosol	41.24	51.75
CDX72188	Canola	mitochondrion	48.94	51.37
CDY27254	Canola	mitochondrion	48.77	51.2
VIT_06s0004g06670.t01	Wine grape	cytosol	48.61	51.12
CDY27998	Canola	cytosol	45.66	51.1
CDY22153	Canola	mitochondrion	48.28	50.77
CDY35983	Canola	mitochondrion	48.61	50.77
Solyc06g082000.2.1	Tomato	cytosol	46.32	50.0
GSMUA_Achr10P...	Banana	mitochondrion	41.9	49.61
HORVU1Hr1G014570.19	Barley	mitochondrion	45.99	48.2
TraesCS1D01G071800.3	Wheat	mitochondrion	46.64	48.14
TraesCS1A01G069300.1	Wheat	mitochondrion	45.99	48.03
Os05t0127200-01	Rice	plasma membrane	46.48	47.49
CDY52122	Canola	cytosol, mitochondrion	45.01	46.69
CDX80341	Canola	mitochondrion	45.01	46.61
HORVU1Hr1G014580.9	Barley	mitochondrion	46.15	46.23
CDY32691	Canola	cytosol	44.84	46.13
OQU77319	Sorghum	mitochondrion	45.01	45.68
CDY61706	Canola	cytosol	44.35	44.43
CDY07057	Canola	cytosol	44.19	44.26
CDY07623	Canola	cytosol	43.04	44.2
CDY60344	Canola	cytosol	43.37	44.17
CDX74806	Canola	cytosol	43.37	44.17
CDY20520	Canola	cytosol	43.86	44.08
CDY52121	Canola	cytosol	41.41	42.95
CDX80342	Canola	cytosol	41.08	42.61
Zm00001d047447_P002	Maize	extracellular	44.68	41.05
CDY33201	Canola	cytosol	8.18	39.06
CDX75008	Canola	cytosol	10.97	38.73
CDY26989	Canola	cytosol, plastid	10.47	32.32
CDY26990	Canola	cytosol	3.93	16.67

Protein Annotations

KEGG:00562+3.1.4.11	KEGG:04070+3.1.4.11	Gene3D:2.60.40.150	Gene3D:3.20.20.190	MapMan:5.7.2.3.2	GO:A0A078C293
InterPro:C2_dom	InterPro:C2_domain_sf	EnsemblPlants:CDX71156	ProteinID:CDX71156	ProteinID:CDX71156.1	InterPro:EF-hand-dom_pair
GO:GO:0003674	GO:GO:0003824	GO:GO:0004435	GO:GO:0006629	GO:GO:0007154	GO:GO:0007165
GO:GO:0008081	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016787	GO:GO:0035556
EnsemblPlantsGene:GSBRNA2T00141123001	InterPro:IPR000008	InterPro:IPR000909	InterPro:IPR001711	InterPro:IPR017946	InterPro:IPR035892
PFAM:PF00168	PFAM:PF00387	PFAM:PF00388	InterPro:PI-PLC_fam	InterPro:PLC-like_Pdiesterase_TIM-brl	InterPro:PLipase_C_PInositol-sp_X_dom
InterPro:PLipase_C_Pinositol-sp_Y	PRINTS:PR00390	PFscan:PS50004	PFscan:PS50007	PFscan:PS50008	PANTHER:PTHR10336
PANTHER:PTHR10336:SF92	MetaCyc:PWY-6351	MetaCyc:PWY-6367	MetaCyc:PWY-7039	SMART:SM00148	SMART:SM00149
SMART:SM00239	SUPFAM:SSF47473	SUPFAM:SSF49562	SUPFAM:SSF51695	UniParc:UPI0004EE24CF	SEG:seg

Description

BnaC03g12400D

Coordinates

chrLK031791:+:3905778..3910493

Molecular Weight (calculated)

69216.4 Da

IEP (calculated)

7.958

GRAVY (calculated)

-0.488

Length

611 amino acids

Sequence
(BLAST)

001: MKVTFKVCFC CARSFKVKSS EPPQEIKTLF DNYSKNGWMS EDEMLRFVIQ VQGETHADSN YVKDIFNMLK HHGVSHPRGL HLEEFYRYLL SDFNSPLPLS
101: GEVWQDMTQP LSHYFLYTGH NSYLTGNQFN SRSSTEPIVQ ALRRGVRVIE LDLWPNSSGT EAEVRHGGTL TSTEDLQKCL NAVKENAFEV SDYPVVLTLE
201: DHLNPDLQKK VAKMVSKTFG RTLFRCRGEY KKCFPSPEAL KNKILISTKP PKEYLQTHIS QGATTTESVN AEELIQDEDE KTVAVEYRDL ISIHAGNRKG
301: GLKNCLNGDP NRVMRLSMSE QWLETLAKTR GPDIVKFTQR NILRIFPKTT RFDSSNYDPL VGWIHGAQMV AFNMQSHGKF LWMMQGMFKA NGGCGYVKKP
401: DVLLSNGPGG GNFNPYSQYL QVKTTLKVKI YNGEGWNLDF SQDHFDRYSP PDFYARVGIA GIPLDTISYR TETDTDEWFP VWNEEFEFPL RVPELALLCI
501: TVKDHDKNTP NDFAGQTCLP LSEIRPGIRA VRLHDRLGDV FKHARLLVRF VLEPLTSSSP SSVSVPDVGK IGIERRSLIV NVKDYDGPSA NPKHNPGTPP
601: VTISQRSPGR G

Best Arabidopsis Sequence Match ( AT5G58670.1 )
(BLAST)

001: MKESFKVCFC CVRNFKVKSS EPPEEIKNLF HDYSQDDRMS ADEMLRFVIQ VQGETHADIN YVKDIFHRLK HHGVFHPRGI HLEGFYRYLL SDFNSPLPLT
101: REVWQDMNQP LSHYFLYTGH NSYLTGNQLN SNSSIEPIVK ALRNGVRVIE LDLWPNSSGK EAEVRHGGTL TSREDLQKCL NVVKENAFQV SAYPVVLTLE
201: DHLTPILQKK VAKMVSKTFG GSLFQCTDET TECFPSPESL KNKILISTKP PKEYLQTQIS KGSTTDESTR AKKISDAEEQ VQEEDEESVA IEYRDLISIH
301: AGNRKGGLKN CLNGDPNRVI RLSMSEQWLE TLAKTRGPDL VKFTQRNLLR IFPKTTRFDS SNYDPLVGWI HGAQMVAFNM QSHGRYLWMM QGMFKANGGC
401: GYVKKPDVLL SNGPEGEIFD PCSQNLPIKT TLKVKIYTGE GWNMDFPLDH FDRYSPPDFY AKVGIAGVPL DTASYRTEID KDEWFPIWDK EFEFPLRVPE
501: LSLLCITVKD YDSNTQNDFA GQTCFPLSEV RPGIRAVRLH DRAGEVYKHV RLLMRFVLEP R

Arabidopsis Description

PLC1Phosphoinositide phospholipase C 1 [Source:UniProtKB/Swiss-Prot;Acc:Q39032]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.