Factsheet for TraesCS1D01G071800.3

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

cytosol 2
mitochondrion 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G137900.1
TraesCS4B01G148100.1
TraesCS4D01G153300.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G55940.1	TraesCS4A01G137900.1	AT4G26630.1	25387881
AT3G55940.1	TraesCS4B01G148100.1	AT4G26630.1	25387881
AT3G55940.1	TraesCS4D01G153300.1	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G069300.1	Wheat	mitochondrion	97.13	98.29
HORVU1Hr1G014570.19	Barley	mitochondrion	92.06	93.48
HORVU1Hr1G014580.9	Barley	mitochondrion	95.27	92.46
Os05t0127200-01	Rice	plasma membrane	77.36	76.59
OQU77319	Sorghum	mitochondrion	75.0	73.75
Zm00001d047447_P002	Maize	extracellular	74.83	66.62
GSMUA_Achr10P...	Banana	mitochondrion	50.51	57.95
PGSC0003DMT400016945	Potato	endoplasmic reticulum	48.31	57.89
CDY01144	Canola	cytosol	45.44	57.23
Bra007201.1-P	Field mustard	mitochondrion	52.36	56.78
KRH31148	Soybean	mitochondrion	56.59	56.59
VIT_13s0067g00900.t01	Wine grape	mitochondrion	56.59	56.49
CDY70294	Canola	mitochondrion	52.03	56.41
KRG97732	Soybean	mitochondrion	56.08	56.08
Solyc05g052760.2.1	Tomato	plastid	54.39	55.23
KRH73190	Soybean	endoplasmic reticulum	55.91	55.17
Bra040049.1-P	Field mustard	cytosol	50.51	55.17
Bra029697.1-P	Field mustard	mitochondrion	52.36	54.96
PGSC0003DMT400069760	Potato	mitochondrion	54.22	54.87
KRH14945	Soybean	mitochondrion	55.57	54.83
CDY27254	Canola	mitochondrion	53.55	54.47
CDX72188	Canola	mitochondrion	53.38	54.3
CDY27998	Canola	cytosol	50.0	54.21
CDY22153	Canola	mitochondrion	53.04	54.04
AT3G08510.1	Thale cress	mitochondrion	52.87	53.87
Solyc06g051620.2.1	Tomato	cytosol, mitochondrion	51.18	53.63
VIT_08s0105g00300.t01	Wine grape	cytosol	49.66	53.36
CDY35983	Canola	mitochondrion	52.7	53.33
PGSC0003DMT400049368	Potato	cytosol	53.55	53.19
VIT_08s0007g02280.t01	Wine grape	cytosol, mitochondrion	55.74	53.14
AT3G55940.1	Thale cress	mitochondrion	52.36	53.08
CDY47356	Canola	mitochondrion	50.51	53.01
PGSC0003DMT400078046	Potato	cytosol	39.53	52.94
Bra032722.1-P	Field mustard	mitochondrion	50.34	52.93
TraesCS2D01G082000.1	Wheat	cytosol, mitochondrion	53.89	52.55
AT5G58670.1	Thale cress	cytosol	49.66	52.41
Solyc10g076710.1.1	Tomato	cytosol	52.7	51.91
CDY71238	Canola	cytosol	35.47	51.85
CDX80344	Canola	cytosol	48.82	51.7
CDY52120	Canola	cytosol, mitochondrion	48.65	51.52
KRH72676	Soybean	cytosol, mitochondrion	32.6	51.33
Bra020361.1-P	Field mustard	cytosol	45.78	51.33
TraesCS5D01G160300.1	Wheat	mitochondrion	51.01	51.27
Bra002627.1-P	Field mustard	cytosol	46.11	51.22
CDY32694	Canola	cytosol	45.44	51.04
CDY02827	Canola	cytosol	45.1	50.66
VIT_06s0004g06670.t01	Wine grape	cytosol	49.49	50.43
TraesCS4D01G195800.1	Wheat	cytosol	53.55	50.08
Solyc06g082000.2.1	Tomato	cytosol	47.64	49.82
KRH17039	Soybean	cytosol, mitochondrion	47.97	49.31
CDY65008	Canola	cytosol	28.89	49.0
CDY70829	Canola	cytosol	41.05	48.41
AT4G38530.1	Thale cress	cytosol	45.95	48.23
Bra033567.1-P	Field mustard	cytosol	42.06	46.98
Bra006749.1-P	Field mustard	cytosol, mitochondrion	48.31	46.81
CDX71156	Canola	cytosol, mitochondrion	48.14	46.64
CDY61028	Canola	cytosol, mitochondrion	48.14	46.64
CDY68902	Canola	cytosol	22.47	45.86

Protein Annotations

KEGG:00562+3.1.4.11	KEGG:04070+3.1.4.11	Gene3D:2.60.40.150	MapMan:5.7.2.3.2	InterPro:C2_dom	InterPro:C2_domain_sf
InterPro:EF-hand-dom_pair	GO:GO:0003674	GO:GO:0003824	GO:GO:0004435	GO:GO:0006629	GO:GO:0007154
GO:GO:0007165	GO:GO:0008081	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016787
GO:GO:0035556	InterPro:IPR000008	InterPro:IPR000909	InterPro:IPR001711	InterPro:IPR017946	InterPro:IPR035892
PFAM:PF00168	PFAM:PF00387	PFAM:PF00388	InterPro:PI-PLC_fam	InterPro:PLC-like_Pdiesterase_TIM-brl	InterPro:PLipase_C_PInositol-sp_X_dom
InterPro:PLipase_C_Pinositol-sp_Y	PRINTS:PR00390	PFscan:PS50004	PFscan:PS50007	PFscan:PS50008	PANTHER:PTHR10336
PANTHER:PTHR10336:SF104	SMART:SM00148	SMART:SM00149	SMART:SM00239	SUPFAM:SSF47473	SUPFAM:SSF49562
SUPFAM:SSF51695	EnsemblPlantsGene:TraesCS1D01G071800	EnsemblPlants:TraesCS1D01G071800.3	TIGR:cd00275	SEG:seg	:

Description

No Description!

Coordinates

chr1D:+:52338597..52345550

Molecular Weight (calculated)

66837.6 Da

IEP (calculated)

6.428

GRAVY (calculated)

-0.447

Length

592 amino acids

Sequence
(BLAST)

001: MTTYRVCCFL RRFRPASNEP SEAIGDVFEA YAGADGGGSA LGEEALRRFL REVQGEAGDD DVEAAAREVL AFAAEHRLLK KGGGLTVEGF YRWLCSDANA
101: ALHPRRGVHH DMGLPLSHYF IYTGHNSYLT GNQLSSGCSE APIAKALRDG VRVIELDLWP NAAKDDVEVL HGSGFVFCRT WTSPVDLMKC LETVKEHAFV
201: SSPYPVILTL EDHLTPHLQA KVAKMVKETF GDLLHLSESE AMPVFPSPED LRGKIIISTK PPKEYLETKS SKEEAQNGSA EEESVWGDEI PDNKAQVATA
301: RQVSEKDTER YVEEDEEMEK KVQQGVNGEY KSLISISLTR RKHDMDQDLK VDPEKVSRMS LGEAAYEKAT ITHGSEIIKF TQRNLLRIFP KTTRITSSNY
401: NPLMGWRYGA QMVAANMQGH GRKLWLTQGM FRANGGCGYV KKPDFLMNTD KMFDPRSKLP VKTRLKVTVY MGDGWRFDFR KTHFDKCSPP DFYARVGIAG
501: VVADTMMKET KVIMDNWIPT WDHEFEFPLS VPELALLRVE VHESDNHQKD DFAGQTCLPV WELRSGIRSV RLYARDGEVL RSVKLLMRFE FS

Best Arabidopsis Sequence Match ( AT2G40116.1 )
(BLAST)

001: MGKEKKTESY NNDSGSYNYR MFKFYNRKFK INEVTPTDDV RDAFCQFAVG GGGGGTDGDS SDGDGSTGVM GAEQLCSFLD DHGESTTVAE AQRLIDEVIR
101: RRHHVTRFTR HGLDLDDFFN FLFYDDLNPP ITPHVHQDMT APLSHYFIYT GHNSYLTGNQ LSSDCSEVPV IKALQRGVRV IELDLWPNST GTDINVLHGR
201: TLTTPVPLMK CLKSIRDYAF SSSPYPVIIT LEDHLTPDLQ AKVAEMATQI FGQMLYYPES DSLLEFPSPA SLLHRIIIST KPPKEYLESR NPIVKQKDNN
301: VSPSSEDETP RTEEIQTLES MLFDQDFESK SDSDQEDEEA SEDQKPAYKR LITIHAGKPK GTVKEEMKVV VDKVRRLSLS EQELDRTCSS NSQDVVRFTQ
401: RNLLRIYPKG TRFNSSNYKP LIGWTHGAQM IAFNMQGYGK SLWLMHGMFR ANGGCGYVKK PNFLMKKGFH DEVFDPRKKL PVKETLKVKV YMGDGWRMDF
501: SHTHFDAYSP PDFYTKMFIV GVPADNAKKK TKIIEDNWYP IWDEEFSFPL TVPELALLRI EVREYDMSEK DDFGGQTCLP VAELRPGIRS VPLYDKKGEK
601: MKSVRLLMRF IFE

Arabidopsis Description

PLC6Phosphoinositide phospholipase C 6 [Source:UniProtKB/Swiss-Prot;Acc:Q8GV43]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.