Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- extracellular 6
- endoplasmic reticulum 7
- vacuole 5
- plasma membrane 7
- golgi 5
Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
locusB | locations |
---|---|
PGSC0003DMT400037344 | |
PGSC0003DMT400057390 |
Inferred from Arabidopsis experimental PPI
Ath locusA | locusB | Ath locusB | Paper |
---|---|---|---|
AT3G55940.1 | PGSC0003DMT400037344 | AT4G26630.1 | 25387881 |
AT3G55940.1 | PGSC0003DMT400057390 | AT4G26630.1 | 25387881 |
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
Solyc06g051620.2.1 | Tomato | cytosol, mitochondrion | 92.11 | 80.53 |
CDY01144 | Canola | cytosol | 63.16 | 66.38 |
PGSC0003DMT400069760 | Potato | mitochondrion | 75.51 | 63.76 |
VIT_13s0067g00900.t01 | Wine grape | mitochondrion | 73.89 | 61.55 |
Bra040049.1-P | Field mustard | cytosol | 66.19 | 60.33 |
CDY27998 | Canola | cytosol | 66.19 | 59.89 |
KRH31148 | Soybean | mitochondrion | 71.46 | 59.63 |
KRG97732 | Soybean | mitochondrion | 70.85 | 59.12 |
GSMUA_Achr10P... | Banana | mitochondrion | 60.73 | 58.14 |
CDY47356 | Canola | mitochondrion | 66.19 | 57.98 |
Bra032722.1-P | Field mustard | mitochondrion | 65.79 | 57.73 |
KRH73190 | Soybean | endoplasmic reticulum | 69.64 | 57.33 |
Bra029697.1-P | Field mustard | mitochondrion | 65.38 | 57.27 |
KRH14945 | Soybean | mitochondrion | 69.43 | 57.17 |
AT3G08510.1 | Thale cress | mitochondrion | 66.4 | 56.45 |
CDY22153 | Canola | mitochondrion | 66.19 | 56.28 |
CDY35983 | Canola | mitochondrion | 66.6 | 56.24 |
AT3G55940.1 | Thale cress | mitochondrion | 65.59 | 55.48 |
Bra007201.1-P | Field mustard | mitochondrion | 60.32 | 54.58 |
PGSC0003DMT400078046 | Potato | cytosol | 48.58 | 54.3 |
CDY70294 | Canola | mitochondrion | 59.72 | 54.03 |
CDX72188 | Canola | mitochondrion | 62.75 | 53.26 |
CDY27254 | Canola | mitochondrion | 62.75 | 53.26 |
PGSC0003DMT400049368 | Potato | cytosol | 63.97 | 53.02 |
PGSC0003DMT400016940 | Potato | cytosol, mitochondrion | 60.73 | 50.76 |
HORVU1Hr1G014570.19 | Barley | mitochondrion | 57.89 | 49.06 |
TraesCS1A01G069300.1 | Wheat | mitochondrion | 57.89 | 48.89 |
TraesCS1D01G071800.3 | Wheat | mitochondrion | 57.89 | 48.31 |
HORVU1Hr1G014580.9 | Barley | mitochondrion | 58.1 | 47.05 |
OQU77319 | Sorghum | mitochondrion | 57.09 | 46.84 |
Os05t0127200-01 | Rice | plasma membrane | 56.68 | 46.82 |
Zm00001d047447_P002 | Maize | extracellular | 56.07 | 41.65 |
PGSC0003DMT400031174 | Potato | cytosol, mitochondrion | 61.34 | 34.28 |
Protein Annotations
KEGG:00562+3.1.4.11 | KEGG:04070+3.1.4.11 | Gene3D:2.60.40.150 | Gene3D:3.20.20.190 | MapMan:5.7.2.3.2 | InterPro:C2_dom |
InterPro:C2_domain_sf | ProteinID:CAA63893 | ProteinID:CAA63893.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003824 |
GO:GO:0004435 | GO:GO:0004871 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0006629 |
GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008081 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 |
GO:GO:0009987 | GO:GO:0016042 | GO:GO:0016787 | GO:GO:0035556 | InterPro:IPR000008 | InterPro:IPR000909 |
InterPro:IPR001711 | InterPro:IPR017946 | InterPro:IPR035892 | UniProt:M1A8D1 | PFAM:PF00168 | PFAM:PF00387 |
PFAM:PF00388 | EnsemblPlantsGene:PGSC0003DMG400006622 | PGSC:PGSC0003DMG400006622 | EnsemblPlants:PGSC0003DMT400016945 | InterPro:PI-PLC_fam | InterPro:PLC-like_Pdiesterase_TIM-brl |
InterPro:PLipase_C_PInositol-sp_X_dom | InterPro:PLipase_C_Pinositol-sp_Y | PRINTS:PR00390 | PFscan:PS50004 | PFscan:PS50007 | PFscan:PS50008 |
PANTHER:PTHR10336 | PANTHER:PTHR10336:SF92 | SMART:SM00148 | SMART:SM00149 | SMART:SM00239 | SUPFAM:SSF49562 |
SUPFAM:SSF51695 | SignalP:SignalP-noTM | UniParc:UPI0002952ED8 | EMBL:X94183 | SEG:seg | : |
Description
Phosphoinositide-specific phospholipase C [Source:PGSC_GENE;Acc:PGSC0003DMG400006622]
Coordinates
chr6:+:26388101..26395014
Molecular Weight (calculated)
56130.9 Da
IEP (calculated)
4.893
GRAVY (calculated)
-0.470
Length
494 amino acids
Sequence
(BLAST)
(BLAST)
001: MASSSVSFLM LILLSILNLG YVNPPLDPKL GIHHDMNAPL SHYYIYTGHN SYLTGNQLSS DCSDVPIIQA LQRSVRVIEL DIWPNSDKDD IEVLHGRTLT
101: APVALIKCLR SIKEHAFSAS EYPVVITLED HLMPDLQEKV AEMITQTFGD MLFSPSESLK ELPSPESLRK RVMISTKPPK EYLQSKEVKE KDDTKKEAEQ
201: DDVDEEEDED EDEDDEEDPK SEKKAASEYK RLIAIHAGKG KGGLSDWLRV DLNKVRRLSL SEPELEKAVD THSKEIIRFT QQNLLRIYPK GIRVDSSNYD
301: PFVGWMHGAQ MVAFNMQGYG RSLWLMHGMF RANGGCGYVK KPDLLLKAGP NNEVFDPTAN LPVKTTLKVT VYMGDGWDKD FDQTHFDTYS PPDFYAKLGI
401: AGVPADEVKK RTKTMDDNWI PSWDEQFEFP LTVPELALLR IKVLDYNLSD KDEFAGQTCL PVAELRQGIR AVPLYDRKGE KYSSVKLLMR FEFI
101: APVALIKCLR SIKEHAFSAS EYPVVITLED HLMPDLQEKV AEMITQTFGD MLFSPSESLK ELPSPESLRK RVMISTKPPK EYLQSKEVKE KDDTKKEAEQ
201: DDVDEEEDED EDEDDEEDPK SEKKAASEYK RLIAIHAGKG KGGLSDWLRV DLNKVRRLSL SEPELEKAVD THSKEIIRFT QQNLLRIYPK GIRVDSSNYD
301: PFVGWMHGAQ MVAFNMQGYG RSLWLMHGMF RANGGCGYVK KPDLLLKAGP NNEVFDPTAN LPVKTTLKVT VYMGDGWDKD FDQTHFDTYS PPDFYAKLGI
401: AGVPADEVKK RTKTMDDNWI PSWDEQFEFP LTVPELALLR IKVLDYNLSD KDEFAGQTCL PVAELRQGIR AVPLYDRKGE KYSSVKLLMR FEFI
001: MGKEKKTESY NNDSGSYNYR MFKFYNRKFK INEVTPTDDV RDAFCQFAVG GGGGGTDGDS SDGDGSTGVM GAEQLCSFLD DHGESTTVAE AQRLIDEVIR
101: RRHHVTRFTR HGLDLDDFFN FLFYDDLNPP ITPHVHQDMT APLSHYFIYT GHNSYLTGNQ LSSDCSEVPV IKALQRGVRV IELDLWPNST GTDINVLHGR
201: TLTTPVPLMK CLKSIRDYAF SSSPYPVIIT LEDHLTPDLQ AKVAEMATQI FGQMLYYPES DSLLEFPSPA SLLHRIIIST KPPKEYLESR NPIVKQKDNN
301: VSPSSEDETP RTEEIQTLES MLFDQDFESK SDSDQEDEEA SEDQKPAYKR LITIHAGKPK GTVKEEMKVV VDKVRRLSLS EQELDRTCSS NSQDVVRFTQ
401: RNLLRIYPKG TRFNSSNYKP LIGWTHGAQM IAFNMQGYGK SLWLMHGMFR ANGGCGYVKK PNFLMKKGFH DEVFDPRKKL PVKETLKVKV YMGDGWRMDF
501: SHTHFDAYSP PDFYTKMFIV GVPADNAKKK TKIIEDNWYP IWDEEFSFPL TVPELALLRI EVREYDMSEK DDFGGQTCLP VAELRPGIRS VPLYDKKGEK
601: MKSVRLLMRF IFE
101: RRHHVTRFTR HGLDLDDFFN FLFYDDLNPP ITPHVHQDMT APLSHYFIYT GHNSYLTGNQ LSSDCSEVPV IKALQRGVRV IELDLWPNST GTDINVLHGR
201: TLTTPVPLMK CLKSIRDYAF SSSPYPVIIT LEDHLTPDLQ AKVAEMATQI FGQMLYYPES DSLLEFPSPA SLLHRIIIST KPPKEYLESR NPIVKQKDNN
301: VSPSSEDETP RTEEIQTLES MLFDQDFESK SDSDQEDEEA SEDQKPAYKR LITIHAGKPK GTVKEEMKVV VDKVRRLSLS EQELDRTCSS NSQDVVRFTQ
401: RNLLRIYPKG TRFNSSNYKP LIGWTHGAQM IAFNMQGYGK SLWLMHGMFR ANGGCGYVKK PNFLMKKGFH DEVFDPRKKL PVKETLKVKV YMGDGWRMDF
501: SHTHFDAYSP PDFYTKMFIV GVPADNAKKK TKIIEDNWYP IWDEEFSFPL TVPELALLRI EVREYDMSEK DDFGGQTCLP VAELRPGIRS VPLYDKKGEK
601: MKSVRLLMRF IFE
Arabidopsis Description
PLC6Phosphoinositide phospholipase C 6 [Source:UniProtKB/Swiss-Prot;Acc:Q8GV43]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.