CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 1
mitochondrion 6
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX89318
CDX94304
CDX97358

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G55940.1	CDX89318	AT4G26630.1	25387881
AT3G55940.1	CDX94304	AT4G26630.1	25387881
AT3G55940.1	CDX97358	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY27254	Canola	mitochondrion	99.31	99.31
CDY70294	Canola	mitochondrion	93.13	99.27
Bra007201.1-P	Field mustard	mitochondrion	92.96	99.08
AT3G55940.1	Thale cress	mitochondrion	87.46	87.16
CDY27998	Canola	cytosol	76.46	81.5
CDY35983	Canola	mitochondrion	81.1	80.68
CDY22153	Canola	mitochondrion	79.9	80.03
CDY47356	Canola	mitochondrion	77.32	79.79
CDY01144	Canola	cytosol	63.06	78.09
KRH31148	Soybean	mitochondrion	68.04	66.89
KRG97732	Soybean	mitochondrion	67.7	66.55
KRH14945	Soybean	mitochondrion	68.38	66.33
VIT_13s0067g00900.t01	Wine grape	mitochondrion	67.18	65.94
KRH73190	Soybean	endoplasmic reticulum	67.87	65.83
Solyc05g052760.2.1	Tomato	plastid	65.29	65.18
PGSC0003DMT400069760	Potato	mitochondrion	64.95	64.62
PGSC0003DMT400016945	Potato	endoplasmic reticulum	53.26	62.75
Solyc06g051620.2.1	Tomato	cytosol, mitochondrion	59.97	61.77
CDY71544	Canola	cytosol	49.14	58.73
CDY69947	Canola	cytosol	20.62	57.42
GSMUA_Achr10P...	Banana	mitochondrion	49.31	55.62
HORVU1Hr1G014570.19	Barley	mitochondrion	54.3	54.2
TraesCS1A01G069300.1	Wheat	mitochondrion	54.3	54.02
CDY07623	Canola	cytosol	54.98	53.78
CDY60344	Canola	cytosol	55.33	53.67
CDY52122	Canola	cytosol, mitochondrion	54.3	53.65
TraesCS1D01G071800.3	Wheat	mitochondrion	54.3	53.38
CDY61706	Canola	cytosol	55.84	53.28
CDY32691	Canola	cytosol	54.3	53.2
CDX74806	Canola	cytosol	54.81	53.17
CDY07057	Canola	cytosol	55.67	53.11
CDX80341	Canola	mitochondrion	53.78	53.05
Os05t0127200-01	Rice	plasma membrane	54.47	53.01
CDY20520	Canola	cytosol	55.33	52.96
CDY52120	Canola	cytosol, mitochondrion	50.17	52.24
HORVU1Hr1G014580.9	Barley	mitochondrion	54.64	52.13
OQU77319	Sorghum	mitochondrion	53.78	51.99
CDY71238	Canola	cytosol	35.91	51.6
CDX80344	Canola	cytosol	49.48	51.52
CDY70829	Canola	cytosol	44.33	51.39
CDY32694	Canola	cytosol	46.22	51.04
CDY02827	Canola	cytosol	46.05	50.85
CDY65008	Canola	cytosol	29.73	49.57
CDY52121	Canola	cytosol	49.83	49.24
CDX80342	Canola	cytosol	49.66	49.07
CDX71156	Canola	cytosol, mitochondrion	51.37	48.94
CDY61028	Canola	cytosol, mitochondrion	51.03	48.61
CDY68902	Canola	cytosol	23.2	46.55
Zm00001d047447_P002	Maize	extracellular	53.09	46.47
CDX75008	Canola	cytosol	13.4	45.09
CDY33201	Canola	cytosol	9.11	41.41
CDY26989	Canola	cytosol, plastid	11.0	32.32
CDY26990	Canola	cytosol	3.78	15.28

Protein Annotations

KEGG:00562+3.1.4.11	KEGG:04070+3.1.4.11	Gene3D:1.10.238.10	Gene3D:2.60.40.150	Gene3D:3.20.20.190	MapMan:5.7.2.3.2
GO:A0A078CB11	InterPro:C2_dom	InterPro:C2_domain_sf	EnsemblPlants:CDX72188	ProteinID:CDX72188	ProteinID:CDX72188.1
InterPro:EF-hand-dom_pair	GO:GO:0003674	GO:GO:0003824	GO:GO:0004435	GO:GO:0006629	GO:GO:0007154
GO:GO:0007165	GO:GO:0008081	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016787
GO:GO:0035556	EnsemblPlantsGene:GSBRNA2T00156018001	InterPro:IPR000008	InterPro:IPR000909	InterPro:IPR001711	InterPro:IPR017946
InterPro:IPR035892	PFAM:PF00168	PFAM:PF00387	PFAM:PF00388	PFAM:PF09279	InterPro:PI-PLC_fam
InterPro:PLC-like_Pdiesterase_TIM-brl	InterPro:PLC_EF-hand-like	InterPro:PLipase_C_PInositol-sp_X_dom	InterPro:PLipase_C_Pinositol-sp_Y	PRINTS:PR00390	PFscan:PS50004
PFscan:PS50007	PFscan:PS50008	PANTHER:PTHR10336	PANTHER:PTHR10336:SF92	MetaCyc:PWY-6351	MetaCyc:PWY-6367
MetaCyc:PWY-7039	SMART:SM00148	SMART:SM00149	SMART:SM00239	SUPFAM:SSF47473	SUPFAM:SSF49562
SUPFAM:SSF51695	UniParc:UPI0004EE2C49	SEG:seg	:	:	:

Description

BnaC08g26860D

Coordinates

chrLK031795:-:2922705..2925364

Molecular Weight (calculated)

66283.5 Da

IEP (calculated)

5.247

GRAVY (calculated)

-0.517

Length

582 amino acids

Sequence
(BLAST)

001: MSKQTYKVCF CFRRRYRHTA SVAPSEIKTI FDNYSDKGLM TVDHLLRFLT DVQKQDQATR EEAQAIVNAS SSLLHRNGLH LDAFFKYLSS VNNSPLAYHE
101: VHQDMDAPLS HYFIFTGHNS YLTGNQLSSD CSEVPIIDAL RKGVRVIELD LWPNSDEDGI DVLHGRTLTS PVELSRCLNA IQTYAFDVSD YPVVVTLEDH
201: LTPKLQAKVA EMVSEIFGEI LFTPPPGECL KEFPSPASLK KRIIISTKPP KEYKKSTDDE DVVKKDRSLG DEEVWGREVP TFTRKDTSDD KNDSNDDDDD
301: DDDDDDDEGD KLKKNVPPQY KNLIAIQAGK PKGGMVECLK VDPDKVRRLS LSEEQLEKAS EKYAKQIVSF TQRNMLRIYP KGTRITSSNY NPLVGWSHGA
401: QMVAFNMQGQ GRSLWVMQGM FRANGGCGYI KKPDILLKSD PAFDPEATLP VKTTLRVTIY MGEGWYYDFP QTHFDRYSPP DFYTRVGIAG VTADTVMRKT
501: KMLEDNWIPD WNEVFEFPLT VPELALLRIE VHEYDMSEKD DFGGQTCLPV WELRQGIRVV PLHNQDGVKC RSVKLLVRLE FV

Best Arabidopsis Sequence Match ( AT3G55940.1 )
(BLAST)

001: MSKQTYKVCF CFRRRYRHTV SVAPAEIKTL FDNYSDKGLM TTDLLLRFLI DVQKQDKATK EEAQDIVNAS SSLLHRNGLH LDAFFKYLFA VTNSPLSSLE
101: VHQDMDAPLS HYFIYTGHNS YLTGNQLSSD CSELPIIEAL KKGVRVIELD IWPNSDEDGI DVLHGRTLTS PVELIKCLRA IREHAFDVSD YPVVVTLEDH
201: LTPKLQAKVA EMVTDIFGEM LFTPPSGECL KEFPSPAFLK KRIMISTKPP KEYKAATDDD LVKKGRDLGD KEVWGREVPS FIRRDRSVDK NDSNGDDDDD
301: DDDDDDDDDG DDKIKKNAPP EYKHLIAIEA GKPKGGITEC LKVDPDKVRR LSLSEEQLEK ASEKYAKQIV RFTQRNLLRV YPKGTRITSS NYNPLIAWSH
401: GAQMVAFNMQ GLGRSLWVMQ GMFRGNGGCG YIKKPDLLLK SNAVFDPEAT LPVKTTLRVT IYMGEGWYYD FPHTHFDRYS PPDFYTRVGI AGVPADTVMK
501: KTKTLEDNWI PAWDEVFEFP LTVPELALLR IEVHEYDMSE KDDFGGQICL PVWELRQGIR AVPLRNQDGV KCRSVKLLVR LEFV

Arabidopsis Description

PLC7Phosphoinositide phospholipase C 7 [Source:UniProtKB/Swiss-Prot;Acc:Q9LY51]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.