Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra039499.1-P | Field mustard | cytosol | 80.56 | 39.06 |
| CDY26989 | Canola | cytosol, plastid | 29.86 | 21.72 |
| CDY68902 | Canola | cytosol | 12.5 | 6.21 |
| CDY71238 | Canola | cytosol | 15.97 | 5.68 |
| CDY01144 | Canola | cytosol | 15.97 | 4.89 |
| CDY52121 | Canola | cytosol | 19.44 | 4.75 |
| CDX80342 | Canola | cytosol | 19.44 | 4.75 |
| CDY33201 | Canola | cytosol | 4.17 | 4.69 |
| CDY71544 | Canola | cytosol | 15.28 | 4.52 |
| CDX74806 | Canola | cytosol | 18.75 | 4.5 |
| CDY52120 | Canola | cytosol, mitochondrion | 17.36 | 4.47 |
| CDY20520 | Canola | cytosol | 18.75 | 4.44 |
| CDY47356 | Canola | mitochondrion | 17.36 | 4.43 |
| CDY70829 | Canola | cytosol | 15.28 | 4.38 |
| CDY07623 | Canola | cytosol | 18.06 | 4.37 |
| CDY02827 | Canola | cytosol | 15.97 | 4.36 |
| CDY60344 | Canola | cytosol | 18.06 | 4.33 |
| CDX80344 | Canola | cytosol | 16.67 | 4.29 |
| CDY27998 | Canola | cytosol | 15.97 | 4.21 |
| CDY32694 | Canola | cytosol | 15.28 | 4.17 |
| CDY22153 | Canola | mitochondrion | 16.67 | 4.13 |
| CDY35983 | Canola | mitochondrion | 16.67 | 4.1 |
| CDY61028 | Canola | cytosol, mitochondrion | 17.36 | 4.09 |
| CDX75008 | Canola | cytosol | 4.86 | 4.05 |
| CDY32691 | Canola | cytosol | 16.67 | 4.04 |
| CDY70294 | Canola | mitochondrion | 15.28 | 4.03 |
| CDY61706 | Canola | cytosol | 16.67 | 3.93 |
| CDY07057 | Canola | cytosol | 16.67 | 3.93 |
| CDX71156 | Canola | cytosol, mitochondrion | 16.67 | 3.93 |
| CDY52122 | Canola | cytosol, mitochondrion | 15.97 | 3.9 |
| CDX80341 | Canola | mitochondrion | 15.97 | 3.9 |
| CDY27254 | Canola | mitochondrion | 15.28 | 3.78 |
| CDX72188 | Canola | mitochondrion | 15.28 | 3.78 |
| CDY69947 | Canola | cytosol | 2.08 | 1.44 |
| CDY65008 | Canola | cytosol | 2.78 | 1.15 |
Protein Annotations
| EnsemblPlants:CDY26990 | EnsemblPlantsGene:GSBRNA2T00036770001 | ProteinID:CDY26990 | ProteinID:CDY26990.1 | UniParc:UPI0004EE7946 | UniProt:A0A078GKA3 |
| MapMan:35.2 | : | : | : | : | : |
Description
BnaC06g12060DBnaC06g12060D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GKA3]
Coordinates
chrLK032198:-:58183..72142
Molecular Weight (calculated)
16135.3 Da
IEP (calculated)
9.781
GRAVY (calculated)
-0.868
Length
144 amino acids
Sequence
(BLAST)
(BLAST)
001: MRLHITYEEN PRNSYETVLQ VVKHNKLEPK HGETMPELLS EFITLLGKEK EEWGGVKAMT ETPLVTTSPR RNVIVIQGDE GSMTSKAVIE ANRETRKEPD
101: RPSSSKAVKQ DLPKASNTLK EPDRPSSSKA VKQDLPKASN TLKV
101: RPSSSKAVKQ DLPKASNTLK EPDRPSSSKA VKQDLPKASN TLKV
001: MSIIMLTHRY LVREVHAVPF LTKHGIGFYF FSRNSVLHVH QKVHLFVLKR FCYPQKFPFK PSKPSQIKAD VQETLLKPSK PSQSKADVQE TLLKPSKPSQ
101: SKADVQEKSA KATSTIKTLQ IQERELFSGS VTMDAAPSPR HVPIPIFCYR E
101: SKADVQEKSA KATSTIKTLQ IQERELFSGS VTMDAAPSPR HVPIPIFCYR E
Arabidopsis Description
Uncharacterized protein At2g22520 [Source:UniProtKB/TrEMBL;Acc:Q9SJY3]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.