CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 6
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX89318
CDX94304
CDX97358

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G55940.1	CDX89318	AT4G26630.1	25387881
AT3G55940.1	CDX94304	AT4G26630.1	25387881
AT3G55940.1	CDX97358	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX72188	Canola	mitochondrion	99.27	93.13
CDY27254	Canola	mitochondrion	98.9	92.78
AT3G55940.1	Thale cress	mitochondrion	87.91	82.19
CDY27998	Canola	cytosol	76.92	76.92
CDY47356	Canola	mitochondrion	79.3	76.77
CDY22153	Canola	mitochondrion	81.5	76.59
CDY35983	Canola	mitochondrion	81.87	76.41
CDY01144	Canola	cytosol	63.74	74.04
KRH31148	Soybean	mitochondrion	69.96	64.53
KRG97732	Soybean	mitochondrion	69.6	64.19
KRH14945	Soybean	mitochondrion	70.51	64.17
VIT_13s0067g00900.t01	Wine grape	mitochondrion	69.6	64.08
KRH73190	Soybean	endoplasmic reticulum	69.96	63.67
Solyc05g052760.2.1	Tomato	plastid	67.03	62.78
PGSC0003DMT400069760	Potato	mitochondrion	66.85	62.39
PGSC0003DMT400016945	Potato	endoplasmic reticulum	54.03	59.72
Solyc06g051620.2.1	Tomato	cytosol, mitochondrion	61.36	59.29
CDY71544	Canola	cytosol	50.55	56.67
CDY69947	Canola	cytosol	20.7	54.07
GSMUA_Achr10P...	Banana	mitochondrion	50.73	53.68
HORVU1Hr1G014570.19	Barley	mitochondrion	56.59	53.0
TraesCS1A01G069300.1	Wheat	mitochondrion	56.41	52.65
CDY07623	Canola	cytosol	56.96	52.27
CDY60344	Canola	cytosol	57.33	52.17
TraesCS1D01G071800.3	Wheat	mitochondrion	56.41	52.03
CDY61706	Canola	cytosol	58.06	51.97
CDY07057	Canola	cytosol	57.88	51.8
Os05t0127200-01	Rice	plasma membrane	56.59	51.67
CDX74806	Canola	cytosol	56.78	51.67
CDY52122	Canola	cytosol, mitochondrion	55.68	51.61
CDY20520	Canola	cytosol	57.33	51.48
CDY32691	Canola	cytosol	55.86	51.35
CDY52120	Canola	cytosol, mitochondrion	52.38	51.16
CDX80341	Canola	mitochondrion	55.13	51.02
OQU77319	Sorghum	mitochondrion	56.04	50.83
HORVU1Hr1G014580.9	Barley	mitochondrion	56.78	50.82
CDX80344	Canola	cytosol	51.65	50.45
CDY71238	Canola	cytosol	37.36	50.37
CDY32694	Canola	cytosol	48.17	49.91
CDY70829	Canola	cytosol	45.79	49.8
CDY02827	Canola	cytosol	47.99	49.72
CDY52121	Canola	cytosol	52.01	48.22
CDX80342	Canola	cytosol	51.83	48.05
CDX71156	Canola	cytosol, mitochondrion	53.48	47.79
CDY61028	Canola	cytosol, mitochondrion	53.11	47.46
CDY65008	Canola	cytosol	30.22	47.28
CDY68902	Canola	cytosol	24.54	46.21
Zm00001d047447_P002	Maize	extracellular	55.13	45.26
CDX75008	Canola	cytosol	14.29	45.09
CDY33201	Canola	cytosol	9.89	42.19
CDY26989	Canola	cytosol, plastid	11.36	31.31
CDY26990	Canola	cytosol	4.03	15.28

Protein Annotations

KEGG:00562+3.1.4.11	KEGG:04070+3.1.4.11	Gene3D:1.10.238.10	Gene3D:2.60.40.150	Gene3D:3.20.20.190	MapMan:5.7.2.3.2
GO:A0A078JU50	UniProt:A0A078JU50	InterPro:C2_dom	InterPro:C2_domain_sf	EnsemblPlants:CDY70294	ProteinID:CDY70294
ProteinID:CDY70294.1	InterPro:EF-hand-dom_pair	GO:GO:0003674	GO:GO:0003824	GO:GO:0004435	GO:GO:0004871
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006629	GO:GO:0007154	GO:GO:0007165
GO:GO:0008081	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016042
GO:GO:0016787	GO:GO:0035556	EnsemblPlantsGene:GSBRNA2T00097902001	InterPro:IPR000008	InterPro:IPR000909	InterPro:IPR001711
InterPro:IPR017946	InterPro:IPR035892	PFAM:PF00168	PFAM:PF00387	PFAM:PF00388	PFAM:PF09279
InterPro:PI-PLC_fam	InterPro:PLC-like_Pdiesterase_TIM-brl	InterPro:PLC_EF-hand-like	InterPro:PLipase_C_PInositol-sp_X_dom	InterPro:PLipase_C_Pinositol-sp_Y	PRINTS:PR00390
PFscan:PS50004	PFscan:PS50007	PFscan:PS50008	PANTHER:PTHR10336	PANTHER:PTHR10336:SF92	MetaCyc:PWY-6351
MetaCyc:PWY-6367	MetaCyc:PWY-7039	SMART:SM00148	SMART:SM00149	SMART:SM00239	SUPFAM:SSF47473
SUPFAM:SSF49562	SUPFAM:SSF51695	UniParc:UPI0004EEB585	SEG:seg	:	:

Description

BnaCnng67650DPhosphoinositide phospholipase C [Source:UniProtKB/TrEMBL;Acc:A0A078JU50]

Coordinates

chrLK041711:+:587..3253

Molecular Weight (calculated)

62256.4 Da

IEP (calculated)

6.568

GRAVY (calculated)

-0.404

Length

546 amino acids

Sequence
(BLAST)

001: MSKQTYKVCF CFRRRYRHTA SVAPSEIKTI FDNYSDKGLM TVDHLLRFLT DVQKQDQATR EEAQAIVNAS SSLLHRNGLH LDAFFKYLSS VNNSPLAYHE
101: VHQDMDAPLS HYFIFTGHNS YLTGNQLSSD CSEVPIIDAL RKGVRVIELD LWPNSDEDGI DVLHGRTLTS PVELSRCLNA IQTYAFDVSD YPVVVTLEDH
201: LTPKLQAKVA EMVSEIFGEI LFTPPPGECL KEFPSPASLK KRIIISTKPP KEYKKTTDDE DVVKKDRSLG DEEVWGREVP TFTRKDTSDD KAGKPKGGMV
301: ECLKVDPDKV RRLSLSEEQL EKASEKYAKQ IVSFTQRNML RIYPKGTRIT SSNYNPLVGW SHGAQMVAFN MQGQGRSLWV MQGMFRANGG CGYIKKPDIL
401: LKSDPVFDPE ATLPVKTTLR VTIYMGEGWY YDFPHIHFDR YSPPDFYTRV GIAGVTADTV MRKTKMLEDN WIPDWNEVFE FPLTVPELAL LRIEVHEYDM
501: SEKDDFGGQT CLPVWELRQG IRVVPLHNQD GVKCRSVKLL VRLEFV

Best Arabidopsis Sequence Match ( AT3G55940.1 )
(BLAST)

001: MSKQTYKVCF CFRRRYRHTV SVAPAEIKTL FDNYSDKGLM TTDLLLRFLI DVQKQDKATK EEAQDIVNAS SSLLHRNGLH LDAFFKYLFA VTNSPLSSLE
101: VHQDMDAPLS HYFIYTGHNS YLTGNQLSSD CSELPIIEAL KKGVRVIELD IWPNSDEDGI DVLHGRTLTS PVELIKCLRA IREHAFDVSD YPVVVTLEDH
201: LTPKLQAKVA EMVTDIFGEM LFTPPSGECL KEFPSPAFLK KRIMISTKPP KEYKAATDDD LVKKGRDLGD KEVWGREVPS FIRRDRSVDK NDSNGDDDDD
301: DDDDDDDDDG DDKIKKNAPP EYKHLIAIEA GKPKGGITEC LKVDPDKVRR LSLSEEQLEK ASEKYAKQIV RFTQRNLLRV YPKGTRITSS NYNPLIAWSH
401: GAQMVAFNMQ GLGRSLWVMQ GMFRGNGGCG YIKKPDLLLK SNAVFDPEAT LPVKTTLRVT IYMGEGWYYD FPHTHFDRYS PPDFYTRVGI AGVPADTVMK
501: KTKTLEDNWI PAWDEVFEFP LTVPELALLR IEVHEYDMSE KDDFGGQICL PVWELRQGIR AVPLRNQDGV KCRSVKLLVR LEFV

Arabidopsis Description

PLC7Phosphoinositide phospholipase C 7 [Source:UniProtKB/Swiss-Prot;Acc:Q9LY51]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.