Factsheet for PGSC0003DMT400078046

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
plasma membrane 3
extracellular 2
endoplasmic reticulum 2
vacuole 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	plasma membrane
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g082000.2.1	Tomato	cytosol	83.94	65.55
PGSC0003DMT400016945	Potato	endoplasmic reticulum	54.3	48.58
GSMUA_Achr10P...	Banana	mitochondrion	51.58	44.19
KRH72676	Soybean	cytosol, mitochondrion	37.56	44.15
CDY65008	Canola	cytosol	34.39	43.55
PGSC0003DMT400069760	Potato	mitochondrion	55.66	42.05
VIT_06s0004g06670.t01	Wine grape	cytosol	54.98	41.82
CDY52120	Canola	cytosol, mitochondrion	52.71	41.68
AT5G58670.1	Thale cress	cytosol	52.71	41.53
CDX80344	Canola	cytosol	52.49	41.5
KRH17039	Soybean	cytosol, mitochondrion	52.94	40.62
Bra002627.1-P	Field mustard	cytosol	48.87	40.53
HORVU1Hr1G014570.19	Barley	mitochondrion	53.17	40.31
CDY02827	Canola	cytosol	47.96	40.23
PGSC0003DMT400049368	Potato	cytosol	54.07	40.1
CDY32694	Canola	cytosol	47.51	39.85
Bra020361.1-P	Field mustard	cytosol	47.51	39.77
TraesCS1A01G069300.1	Wheat	mitochondrion	52.49	39.66
TraesCS1D01G071800.3	Wheat	mitochondrion	52.94	39.53
Bra033567.1-P	Field mustard	cytosol	46.83	39.06
PGSC0003DMT400016940	Potato	cytosol, mitochondrion	52.04	38.92
AT4G38530.1	Thale cress	cytosol	49.55	38.83
OQU77319	Sorghum	mitochondrion	52.49	38.54
HORVU1Hr1G014580.9	Barley	mitochondrion	53.17	38.52
Os05t0127200-01	Rice	plasma membrane	52.04	38.46
Bra006749.1-P	Field mustard	cytosol, mitochondrion	52.94	38.3
CDY61028	Canola	cytosol, mitochondrion	52.49	37.97
CDY70829	Canola	cytosol	42.99	37.85
CDX71156	Canola	cytosol, mitochondrion	52.26	37.81
CDY71238	Canola	cytosol	33.94	37.04
Zm00001d047447_P002	Maize	extracellular	50.91	33.83
CDY68902	Canola	cytosol	16.97	25.86
PGSC0003DMT400031174	Potato	cytosol, mitochondrion	50.91	25.45

Protein Annotations

KEGG:00562+3.1.4.11	KEGG:04070+3.1.4.11	Gene3D:2.60.40.150	Gene3D:3.20.20.190	MapMan:5.7.2.3.2	InterPro:C2_dom
InterPro:C2_domain_sf	GO:GO:0003674	GO:GO:0003824	GO:GO:0004435	GO:GO:0004871	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0006629	GO:GO:0007154	GO:GO:0007165	GO:GO:0008081
GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016042	GO:GO:0016787
GO:GO:0035556	InterPro:IPR000008	InterPro:IPR000909	InterPro:IPR001711	InterPro:IPR017946	InterPro:IPR035892
UniProt:M1CZB1	PFAM:PF00168	PFAM:PF00387	PFAM:PF00388	EnsemblPlantsGene:PGSC0003DMG400030360	PGSC:PGSC0003DMG400030360
EnsemblPlants:PGSC0003DMT400078046	InterPro:PI-PLC_fam	InterPro:PLC-like_Pdiesterase_TIM-brl	InterPro:PLipase_C_PInositol-sp_X_dom	InterPro:PLipase_C_Pinositol-sp_Y	PRINTS:PR00390
PFscan:PS50004	PFscan:PS50007	PFscan:PS50008	PANTHER:PTHR10336	PANTHER:PTHR10336:SF92	SMART:SM00148
SMART:SM00149	SMART:SM00239	SUPFAM:SSF49562	SUPFAM:SSF51695	UniParc:UPI0002965621	:

Description

PI-phospholipase C PLC6 [Source:PGSC_GENE;Acc:PGSC0003DMG400030360]

Coordinates

chr6:+:57232602..57238419

Molecular Weight (calculated)

50144.2 Da

IEP (calculated)

6.929

GRAVY (calculated)

-0.335

Length

442 amino acids

Sequence
(BLAST)

001: MSAQFVNFVY PDYAVSMARL IGLEFQEDAN RKVITSTKPN VKDCLEGVKI ESIGFPGHNS YLTGNQLSSD CSIEPIKKAL KKGVRVIELD LWPNITKDDI
101: DVCHGGTLTT PVKLSKCLKA IKEDAFSFSE YPVILTFEDH LHPCPHLQEK VAQQIQLEEG DEDEVPKYRD LIAIHATKHK GGMENFGSHG SSNKVGRCSM
201: NELALEDAVA EHSHQLIRFT QRNILRVYPK GARVDSSNYD PLIAWLRGAQ MVAFNMQGYG RFLWMMQGFF RANGGCGYVK KPDFLLSPDG ACDEVFNSKA
301: LPIKKTLKVK IYMGEGWRAD FHFRHFDYCS PPDFYVRVGM VGVPADASKM RKTKTVNDQW IPIWNENEEF EFSIRVPELA LLRIDVKDYD PSGEDEFAGQ
401: TCLPVSELRT GIRCVPLYNR RGDVYRSVKL LMRFDFSTPL IN

Best Arabidopsis Sequence Match ( AT2G40116.1 )
(BLAST)

001: MGKEKKTESY NNDSGSYNYR MFKFYNRKFK INEVTPTDDV RDAFCQFAVG GGGGGTDGDS SDGDGSTGVM GAEQLCSFLD DHGESTTVAE AQRLIDEVIR
101: RRHHVTRFTR HGLDLDDFFN FLFYDDLNPP ITPHVHQDMT APLSHYFIYT GHNSYLTGNQ LSSDCSEVPV IKALQRGVRV IELDLWPNST GTDINVLHGR
201: TLTTPVPLMK CLKSIRDYAF SSSPYPVIIT LEDHLTPDLQ AKVAEMATQI FGQMLYYPES DSLLEFPSPA SLLHRIIIST KPPKEYLESR NPIVKQKDNN
301: VSPSSEDETP RTEEIQTLES MLFDQDFESK SDSDQEDEEA SEDQKPAYKR LITIHAGKPK GTVKEEMKVV VDKVRRLSLS EQELDRTCSS NSQDVVRFTQ
401: RNLLRIYPKG TRFNSSNYKP LIGWTHGAQM IAFNMQGYGK SLWLMHGMFR ANGGCGYVKK PNFLMKKGFH DEVFDPRKKL PVKETLKVKV YMGDGWRMDF
501: SHTHFDAYSP PDFYTKMFIV GVPADNAKKK TKIIEDNWYP IWDEEFSFPL TVPELALLRI EVREYDMSEK DDFGGQTCLP VAELRPGIRS VPLYDKKGEK
601: MKSVRLLMRF IFE

Arabidopsis Description

PLC6Phosphoinositide phospholipase C 6 [Source:UniProtKB/Swiss-Prot;Acc:Q8GV43]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.