CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 5
cytosol 1
plasma membrane 2
extracellular 1
endoplasmic reticulum 2
vacuole 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	plasma membrane
Predotar:	plastid
PProwler:	plastid
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	endoplasmic reticulum

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG97734	Soybean	cytosol	87.05	95.33
KRH14947	Soybean	cytosol, mitochondrion	69.18	70.81
KRH73189	Soybean	cytosol	68.52	69.21
CDY69947	Canola	cytosol	22.13	64.59
VIT_13s0067g00890.t01	Wine grape	cytosol	59.84	61.66
PGSC0003DMT400016940	Potato	cytosol, mitochondrion	58.69	60.58
Solyc06g051630.2.1	Tomato	cytosol, mitochondrion	58.69	60.37
KRH14948	Soybean	cytosol	59.67	60.36
CDY07623	Canola	cytosol	58.2	59.66
CDY60344	Canola	cytosol	58.52	59.5
Bra000168.1-P	Field mustard	cytosol	58.52	58.91
CDY07057	Canola	cytosol	58.85	58.85
CDY61706	Canola	cytosol	58.85	58.85
AT2G40116.1	Thale cress	cytosol	59.02	58.73
CDX74806	Canola	cytosol	57.7	58.67
Bra004987.1-P	Field mustard	cytosol	58.52	58.62
CDY20520	Canola	cytosol	58.36	58.55
Bra017030.1-P	Field mustard	cytosol	57.05	58.29
KRH73188	Soybean	cytosol	56.39	57.91
KRH31144	Soybean	cytosol	53.77	56.26
KRH14945	Soybean	mitochondrion	54.75	55.67
KRH31148	Soybean	mitochondrion	53.93	55.57
KRH73190	Soybean	endoplasmic reticulum	54.59	55.5
KRG97732	Soybean	mitochondrion	53.44	55.07
KRH72676	Soybean	cytosol, mitochondrion	33.93	55.05
KRG97735	Soybean	cytosol	55.08	54.02
KRH17039	Soybean	cytosol, mitochondrion	49.02	51.91
KRH14952	Soybean	cytosol	30.82	48.33
Solyc03g096070.2.1	Tomato	cytosol, mitochondrion	58.85	40.61
PGSC0003DMT400031174	Potato	cytosol, mitochondrion	58.52	40.38

Protein Annotations

KEGG:00562+3.1.4.11	KEGG:04070+3.1.4.11	Gene3D:2.60.40.150	Gene3D:3.20.20.190	MapMan:5.7.2.3.2	EMBL:ACUP02007125
InterPro:C2_dom	InterPro:C2_domain_sf	InterPro:EF-hand-dom_pair	EnsemblPlantsGene:GLYMA_11G230000	GO:GO:0003674	GO:GO:0003824
GO:GO:0004435	GO:GO:0004871	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006629
GO:GO:0007154	GO:GO:0007165	GO:GO:0008081	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0009987	GO:GO:0016042	GO:GO:0016787	GO:GO:0035556	InterPro:IPR000008	InterPro:IPR000909
InterPro:IPR001711	InterPro:IPR017946	InterPro:IPR035892	UniProt:K7LRR0	EnsemblPlants:KRH31146	ProteinID:KRH31146
ProteinID:KRH31146.1	PFAM:PF00168	PFAM:PF00387	PFAM:PF00388	InterPro:PI-PLC_fam	InterPro:PLC-like_Pdiesterase_TIM-brl
InterPro:PLipase_C_PInositol-sp_X_dom	InterPro:PLipase_C_Pinositol-sp_Y	PRINTS:PR00390	PFscan:PS50004	PFscan:PS50007	PFscan:PS50008
PANTHER:PTHR10336	PANTHER:PTHR10336:SF101	MetaCyc:PWY-6351	MetaCyc:PWY-6367	MetaCyc:PWY-7039	SMART:SM00148
SMART:SM00149	SMART:SM00239	SUPFAM:SSF47473	SUPFAM:SSF49562	SUPFAM:SSF51695	UniParc:UPI0002950278
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr11:+:32527636..32534017

Molecular Weight (calculated)

69027.2 Da

IEP (calculated)

6.675

GRAVY (calculated)

-0.408

Length

610 amino acids

Sequence
(BLAST)

001: MALFLCPQVC SIHIVTARSL QLQSPFHSAA IAISFLKHTH RHQSLSLIHS VYTIMASHNY KVFSCFNRKF TVTEPGPPPD VERAFSEFAA GASSLSGDHI
101: LRFLAEHQGD VDCTAADSER MLQQSRKEDR ESGMDLHDFF RFLLHDDFNS PIKSQVHHDM NAPLSHYFIY TGHNSYLTGN QLSSDCSDVP IIKALQGGVR
201: VIELDLWPNS DKDDIEVVHG RTLTTPVSLI QCLKSIKEYA FVKSHYPLII TLEDHLTPDL QAKAAEMATQ VFGELLYYPQ TDSLMEFPSP ESLKGRILIS
301: TKPPKEFLES KECDDKDNEK ESADEVLSLP DQTSERETDD KSAPEYKRLI TIHAGKPKGD IQDELKAAGA VRRLSLSEQA LEKASESYGA DIVRFTQNNI
401: LRVYPKGTRL NSSNYKPHIG WTYGAQMVAF NMQGYGKSLR YMQGMFRANG GCGYVKKPEF LIEKGPYNEV FDPKRTLPVK KTLKVKVYMG TGWSLDFSQT
501: DFDTYSPPDF YVKVCIVGVP ADMAKKKTCV ISNNWFPVWD EQFDFPLTVP ELALLRIEVR ENDKSQKDDF GGQTCLPVSE LKSGFRSVPL YDEKGDKLKS
601: VKLLMRFQFR

Best Arabidopsis Sequence Match ( AT2G40116.1 )
(BLAST)

001: MGKEKKTESY NNDSGSYNYR MFKFYNRKFK INEVTPTDDV RDAFCQFAVG GGGGGTDGDS SDGDGSTGVM GAEQLCSFLD DHGESTTVAE AQRLIDEVIR
101: RRHHVTRFTR HGLDLDDFFN FLFYDDLNPP ITPHVHQDMT APLSHYFIYT GHNSYLTGNQ LSSDCSEVPV IKALQRGVRV IELDLWPNST GTDINVLHGR
201: TLTTPVPLMK CLKSIRDYAF SSSPYPVIIT LEDHLTPDLQ AKVAEMATQI FGQMLYYPES DSLLEFPSPA SLLHRIIIST KPPKEYLESR NPIVKQKDNN
301: VSPSSEDETP RTEEIQTLES MLFDQDFESK SDSDQEDEEA SEDQKPAYKR LITIHAGKPK GTVKEEMKVV VDKVRRLSLS EQELDRTCSS NSQDVVRFTQ
401: RNLLRIYPKG TRFNSSNYKP LIGWTHGAQM IAFNMQGYGK SLWLMHGMFR ANGGCGYVKK PNFLMKKGFH DEVFDPRKKL PVKETLKVKV YMGDGWRMDF
501: SHTHFDAYSP PDFYTKMFIV GVPADNAKKK TKIIEDNWYP IWDEEFSFPL TVPELALLRI EVREYDMSEK DDFGGQTCLP VAELRPGIRS VPLYDKKGEK
601: MKSVRLLMRF IFE

Arabidopsis Description

PLC6Phosphoinositide phospholipase C 6 [Source:UniProtKB/Swiss-Prot;Acc:Q8GV43]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.