CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

plastid 8
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH40136	Soybean	endoplasmic reticulum	84.21	71.34
AT5G39950.1	Thale cress	cytosol	68.42	68.42
VIT_14s0066g02560.t01	Wine grape	cytosol	67.67	66.18
Bra028445.1-P	Field mustard	cytosol	64.66	64.66
CDY65333	Canola	cytosol	64.66	64.66
CDX67442	Canola	cytosol	64.66	64.18
PGSC0003DMT400003564	Potato	plastid	67.67	63.38
KRH40137	Soybean	endoplasmic reticulum	60.9	61.83
Bra040318.1-P	Field mustard	cytosol	60.15	61.54
KRH01123	Soybean	cytosol	54.89	59.35
KRH40138	Soybean	cytosol, plastid	54.14	57.6
KRH69383	Soybean	cytosol	54.89	57.48
KRH74753	Soybean	cytosol	53.38	57.26
KRH74754	Soybean	cytosol	54.14	57.14
KRH69384	Soybean	cytosol	54.14	56.25
TraesCS5B01G452700.1	Wheat	cytosol, golgi, unclear	53.38	54.2
TraesCS5D01G454800.1	Wheat	cytosol	53.38	54.2
KRG99185	Soybean	cytosol, plastid	48.87	53.72
KRH45834	Soybean	cytosol, plastid	48.87	53.72
HORVU5Hr1G107210.1	Barley	cytosol	52.63	53.44
TraesCS5A01G448200.1	Wheat	cytosol	52.63	53.44
GSMUA_Achr2P17710_001	Banana	cytosol	48.87	51.18
Os03t0800700-01	Rice	plastid	50.38	50.0
KRH01119	Soybean	cytosol	52.63	50.0
KRH76717	Soybean	endoplasmic reticulum, nucleus	44.36	49.17
EER90722	Sorghum	cytosol	48.87	48.87
CDY57101	Canola	cytosol	60.15	48.48
HORVU5Hr1G107170.1	Barley	cytosol	52.63	48.28
Zm00001d034491_P001	Maize	plastid	48.12	48.12
Solyc02g087630.2.1	Tomato	plastid	60.9	47.93
Os07t0190800-01	Rice	cytosol	49.62	47.83
GSMUA_Achr9P10960_001	Banana	mitochondrion, plastid	44.36	47.58
GSMUA_Achr7P16980_001	Banana	cytosol	36.84	47.57
KRH28739	Soybean	cytosol	42.86	47.5
KRH15131	Soybean	cytosol, nucleus	41.35	46.22
KRH51778	Soybean	endoplasmic reticulum	40.6	46.15
KRH61100	Soybean	cytosol	39.1	44.44
KRH74748	Soybean	plastid	45.86	44.2
KRH05879	Soybean	endoplasmic reticulum	39.85	43.09
CDY37032	Canola	cytosol	60.15	42.78
KRH69387	Soybean	plastid	44.36	42.75
KRH10686	Soybean	cytosol	33.08	35.48
KRH09556	Soybean	cytosol	36.09	35.04
HORVU6Hr1G018190.1	Barley	mitochondrion	24.06	34.41
GSMUA_Achr7P12220_001	Banana	cytosol	29.32	33.62
KRH21649	Soybean	cytosol, plastid	30.83	32.8
KRH00477	Soybean	cytosol	33.83	32.37
KRH22228	Soybean	cytosol	29.32	31.97
KRH64869	Soybean	cytosol	36.09	31.37
KRH25890	Soybean	nucleus	29.32	30.95
KRH27111	Soybean	nucleus	29.32	30.95
KRH55615	Soybean	cytosol	28.57	30.16
KRH33304	Soybean	cytosol	28.57	30.16
KRH40706	Soybean	mitochondrion	32.33	25.44
KRH00940	Soybean	nucleus, plastid	32.33	24.02
KRH40285	Soybean	plastid	32.33	23.76

Protein Annotations

MapMan:10.6.1	EntrezGene:100527508	Gene3D:3.40.30.10	EMBL:ACUP02011501	EnsemblPlantsGene:GLYMA_18G255400	GO:GO:0003674
GO:GO:0003824	GO:GO:0004791	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006662	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0015035
GO:GO:0016671	GO:GO:0019725	GO:GO:0034599	GO:GO:0045454	GO:GO:0047134	GO:GO:0055114
GO:GO:0098869	UniProt:I1N4A4	InterPro:IPR013766	EnsemblPlants:KRH01124	ProteinID:KRH01124	ProteinID:KRH01124.1
PFAM:PF00085	PIRSF:PIRSF000077	PRINTS:PR00421	ScanProsite:PS00194	PFscan:PS51352	PANTHER:PTHR10438
PANTHER:PTHR10438:SF243	SUPFAM:SSF52833	TIGRFAMs:TIGR01068	InterPro:Thioredoxin	InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_CS
InterPro:Thioredoxin_domain	UniParc:UPI00006025D7	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr18:-:54166856..54167862

Molecular Weight (calculated)

14720.5 Da

IEP (calculated)

5.239

GRAVY (calculated)

-0.262

Length

133 amino acids

Sequence
(BLAST)

001: MGGILSGLLG SDAAAAASSP ESSTSRVSSF HSSPRWQLYF NEIKDTDKLV VIDFSASWCG PCKFIEPAIH AMADKFNDVD FVKIDVDELP DVAQEFQVQA
101: MPTFVLWKKG KEVDKVVGAK KDELEKKIEK HRS

Best Arabidopsis Sequence Match ( AT5G39950.1 )
(BLAST)

001: MGGALSTVFG SGEDATAAGT ESEPSRVLKF SSSARWQLHF NEIKESNKLL VVDFSASWCG PCRMIEPAIH AMADKFNDVD FVKLDVDELP DVAKEFNVTA
101: MPTFVLVKRG KEIERIIGAK KDELEKKVSK LRA

Arabidopsis Description

TRX2Thioredoxin H2 [Source:UniProtKB/Swiss-Prot;Acc:Q38879]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.