Factsheet for Zm00001d034491_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

plastid: 20089766
extracellular: 20408568
plastid: 22065420
mitochondrion: 27297264

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 20089766 doi

G Friso, W Majeran, M Huang, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER90722	Sorghum	cytosol	90.98	90.98
TraesCS5A01G448200.1	Wheat	cytosol	72.93	74.05
HORVU5Hr1G107210.1	Barley	cytosol	72.93	74.05
Os03t0800700-01	Rice	plastid	74.44	73.88
TraesCS5D01G454800.1	Wheat	cytosol	72.18	73.28
TraesCS5B01G452700.1	Wheat	cytosol, golgi, unclear	71.43	72.52
HORVU5Hr1G107170.1	Barley	cytosol	72.93	66.9
GSMUA_Achr2P17710_001	Banana	cytosol	57.14	59.84
GSMUA_Achr7P16980_001	Banana	cytosol	41.35	53.4
KRH40137	Soybean	endoplasmic reticulum	51.88	52.67
KRH01123	Soybean	cytosol	47.37	51.22
KRH40138	Soybean	cytosol, plastid	48.12	51.2
VIT_14s0066g02560.t01	Wine grape	cytosol	51.13	50.0
Zm00001d007800_P001	Maize	cytosol	44.36	49.17
KRH01124	Soybean	endoplasmic reticulum	48.12	48.12
AT5G39950.1	Thale cress	cytosol	48.12	48.12
VIT_01s0026g01460.t01	Wine grape	cytosol	43.61	47.93
Bra040318.1-P	Field mustard	cytosol	46.62	47.69
CDY65333	Canola	cytosol	47.37	47.37
KRH74754	Soybean	cytosol	44.36	46.83
Zm00001d019034_P001	Maize	cytosol, extracellular, mitochondrion	42.86	46.72
Bra028445.1-P	Field mustard	cytosol	46.62	46.62
CDX67442	Canola	cytosol	46.62	46.27
PGSC0003DMT400045460	Potato	cytosol	23.31	45.59
KRH69383	Soybean	cytosol	42.11	44.09
GSMUA_Achr7P12220_001	Banana	cytosol	38.35	43.97
PGSC0003DMT400003564	Potato	plastid	46.62	43.66
KRH74753	Soybean	cytosol	40.6	43.55
Solyc04g005810.2.1	Tomato	plastid	42.86	42.86
KRH40136	Soybean	endoplasmic reticulum	50.38	42.68
KRH01119	Soybean	cytosol	44.36	42.14
CDY45144	Canola	cytosol	39.85	41.41
CDY30901	Canola	cytosol	39.85	41.41
Bra017898.1-P	Field mustard	cytosol	39.85	41.41
Bra027837.1-P	Field mustard	cytosol	39.85	41.41
KRH45834	Soybean	cytosol, plastid	37.59	41.32
AT1G59730.1	Thale cress	cytosol	39.85	41.09
CDY27290	Canola	cytosol	39.1	40.62
KRH69384	Soybean	cytosol	39.1	40.62
KRG99185	Soybean	cytosol, plastid	36.84	40.5
Solyc05g006870.2.1	Tomato	cytosol	40.6	40.0
Solyc05g006830.2.1	Tomato	cytosol, plastid	40.6	40.0
CDY57101	Canola	cytosol	48.87	39.39
PGSC0003DMT400045450	Potato	cytosol	39.85	39.26
Solyc05g006860.2.1	Tomato	cytosol	39.1	38.52
Zm00001d038652_P003	Maize	cytosol	36.84	38.28
Solyc05g006850.2.1	Tomato	cytosol	37.59	37.04
KRH69387	Soybean	plastid	37.59	36.23
KRH74748	Soybean	plastid	37.59	36.23
CDY03743	Canola	extracellular	23.31	36.05
Zm00001d019035_P001	Maize	cytosol	33.83	35.71
Solyc02g087630.2.1	Tomato	plastid	44.36	34.91
CDY38768	Canola	cytosol, plastid	38.35	33.77
Bra016258.1-P	Field mustard	cytosol	38.35	33.77
CDY11645	Canola	cytosol, plastid	38.35	33.77
CDY37032	Canola	cytosol	47.37	33.69
AT1G69880.1	Thale cress	plastid	36.84	33.11
CDY23544	Canola	cytosol	36.84	33.11
CDY23543	Canola	cytosol	34.59	32.86
CDY04457	Canola	cytosol	24.06	32.65
CDY48387	Canola	cytosol	34.59	32.62
Bra003976.1-P	Field mustard	cytosol	34.59	32.62
Zm00001d037499_P001	Maize	cytosol	31.58	31.58
Bra003977.1-P	Field mustard	cytosol	35.34	31.54
CDY48388	Canola	cytosol	33.83	30.61
Zm00001d039710_P004	Maize	cytosol	31.58	29.17
Zm00001d026368_P001	Maize	cytosol, extracellular	26.32	27.13
Zm00001d024835_P001	Maize	plastid	27.07	20.0
Zm00001d038486_P002	Maize	cytosol	21.05	19.58
Zm00001d010871_P001	Maize	plastid	27.82	18.41
CDY11641	Canola	plastid	18.05	11.59

Protein Annotations

MapMan:10.6.1	EntrezGene:100856910	Gene3D:3.40.30.10	UniProt:B6SL60	EMBL:BT088427	EMBL:EU953475
GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005623	GO:GO:0006662	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0015035	GO:GO:0019725	GO:GO:0045454	GO:GO:0055114
InterPro:IPR013766	ProteinID:ONM10373.1	PFAM:PF00085	PIRSF:PIRSF000077	PRINTS:PR00421	ScanProsite:PS00194
PFscan:PS51352	PANTHER:PTHR10438	PANTHER:PTHR10438:SF243	SUPFAM:SSF52833	InterPro:Thioredoxin	InterPro:Thioredoxin-like_sf
InterPro:Thioredoxin_CS	InterPro:Thioredoxin_domain	UniParc:UPI000182AD15	EnsemblPlantsGene:Zm00001d034491	EnsemblPlants:Zm00001d034491_P001	EnsemblPlants:Zm00001d034491_T001

Description

Thioredoxin

Coordinates

chr1:-:294501103..294503765

Molecular Weight (calculated)

14622.5 Da

IEP (calculated)

6.515

GRAVY (calculated)

-0.048

Length

133 amino acids

Sequence
(BLAST)

001: MGSFFSTLVT PPPAADDPNC AVVAAHSKAT YDEQWAAHKS SSKLMVIDFS ASWCGPCRFI EPAFKELASR FTDAIFVKVD VDELAEVART WKVEAMPTFV
101: LVKDGKEVGR VIGAKKDELE RKIRMFVTSS SSS

Best Arabidopsis Sequence Match ( AT5G39950.1 )
(BLAST)

001: MGGALSTVFG SGEDATAAGT ESEPSRVLKF SSSARWQLHF NEIKESNKLL VVDFSASWCG PCRMIEPAIH AMADKFNDVD FVKLDVDELP DVAKEFNVTA
101: MPTFVLVKRG KEIERIIGAK KDELEKKVSK LRA

Arabidopsis Description

TRX2Thioredoxin H2 [Source:UniProtKB/Swiss-Prot;Acc:Q38879]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.