Factsheet for Solyc05g006830.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

cytosol 4
plastid 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400045450	Potato	cytosol	98.52	98.52
Solyc05g006870.2.1	Tomato	cytosol	89.63	89.63
Solyc05g006860.2.1	Tomato	cytosol	88.15	88.15
Solyc04g005810.2.1	Tomato	plastid	71.85	72.93
Solyc05g006850.2.1	Tomato	cytosol	69.63	69.63
VIT_01s0026g01460.t01	Wine grape	cytosol	59.26	66.12
KRH69383	Soybean	cytosol	61.48	65.35
KRH74754	Soybean	cytosol	60.74	65.08
KRH74753	Soybean	cytosol	59.26	64.52
KRH69384	Soybean	cytosol	58.52	61.72
KRG99185	Soybean	cytosol, plastid	53.33	59.5
KRH45834	Soybean	cytosol, plastid	52.59	58.68
Solyc04g080850.2.1	Tomato	extracellular	44.44	48.78
GSMUA_Achr2P17710_001	Banana	cytosol	44.44	47.24
GSMUA_Achr9P10960_001	Banana	mitochondrion, plastid	42.96	46.77
Solyc02g084710.2.1	Tomato	extracellular	40.74	46.61
Os07t0190800-01	Rice	cytosol	47.41	46.38
KRH69387	Soybean	plastid	46.67	45.65
KRH74748	Soybean	plastid	45.93	44.93
AT1G59730.1	Thale cress	cytosol	42.22	44.19
Os03t0800700-01	Rice	plastid	43.7	44.03
EER90722	Sorghum	cytosol	42.96	43.61
HORVU5Hr1G107210.1	Barley	cytosol	42.22	43.51
TraesCS5D01G454800.1	Wheat	cytosol	42.22	43.51
TraesCS5B01G452700.1	Wheat	cytosol, golgi, unclear	42.22	43.51
TraesCS5A01G448200.1	Wheat	cytosol	42.22	43.51
CDY45144	Canola	cytosol	40.74	42.97
Bra027837.1-P	Field mustard	cytosol	40.74	42.97
GSMUA_Achr7P16980_001	Banana	cytosol	32.59	42.72
Solyc02g087630.2.1	Tomato	plastid	53.33	42.6
Bra017898.1-P	Field mustard	cytosol	40.0	42.19
CDY27290	Canola	cytosol	40.0	42.19
CDY30901	Canola	cytosol	40.0	42.19
Zm00001d034491_P001	Maize	plastid	40.0	40.6
CDY23543	Canola	cytosol	41.48	40.0
Bra003976.1-P	Field mustard	cytosol	41.48	39.72
CDY48387	Canola	cytosol	41.48	39.72
HORVU5Hr1G107170.1	Barley	cytosol	42.22	39.31
AT1G69880.1	Thale cress	plastid	42.22	38.51
CDY23544	Canola	cytosol	42.22	38.51
CDY38768	Canola	cytosol, plastid	42.96	38.41
Bra016258.1-P	Field mustard	cytosol	42.96	38.41
CDY11645	Canola	cytosol, plastid	42.22	37.75
Bra003977.1-P	Field mustard	cytosol	41.48	37.58
CDY48388	Canola	cytosol	40.0	36.73
Solyc02g079960.2.1	Tomato	cytosol	33.33	36.0
Solyc03g118560.1.1	Tomato	cytosol	31.85	35.25
GSMUA_Achr7P12220_001	Banana	cytosol	25.93	30.17
Solyc03g095500.2.1	Tomato	cytosol	28.89	28.06
HORVU6Hr1G018190.1	Barley	mitochondrion	19.26	27.96
CDY03743	Canola	extracellular	17.04	26.74
Solyc09g015820.2.1	Tomato	plastid	30.37	26.62
CDY04457	Canola	cytosol	17.04	23.47
Solyc05g056300.2.1	Tomato	plastid	28.15	20.88
CDY11641	Canola	plastid	18.52	12.08

Protein Annotations

MapMan:10.6.1	Gene3D:3.40.30.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0004791	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006662	GO:GO:0006950	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0015035	GO:GO:0016671	GO:GO:0019725	GO:GO:0034599
GO:GO:0045454	GO:GO:0047134	GO:GO:0055114	GO:GO:0098869	InterPro:IPR013766	UniProt:K4BWK9
PFAM:PF00085	PIRSF:PIRSF000077	PRINTS:PR00421	ScanProsite:PS00194	PFscan:PS51352	PANTHER:PTHR10438
PANTHER:PTHR10438:SF278	SUPFAM:SSF52833	EnsemblPlantsGene:Solyc05g006830.2	EnsemblPlants:Solyc05g006830.2.1	TIGRFAMs:TIGR01068	InterPro:Thioredoxin
InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_CS	InterPro:Thioredoxin_domain	UniParc:UPI0002765893	SEG:seg	:

Description

Thioredoxin [Source:UniProtKB/TrEMBL;Acc:K4BWK9]

Coordinates

chr5:-:1453126..1454232

Molecular Weight (calculated)

15365.5 Da

IEP (calculated)

8.668

GRAVY (calculated)

-0.337

Length

135 amino acids

Sequence
(BLAST)

001: MGANYSSTWH ETHNMPITPQ SKRSQVIAFH SSTKWKLHFD SLKNTNKLIV IDFTATWCGP CKYMEPVLND FAAKYTDVEF VKIDVDELDD VAQEYGVQAM
101: PTFVLIKKGK VVDKIVGADK DGLQKKIQKH KAIYV

Best Arabidopsis Sequence Match ( AT5G39950.1 )
(BLAST)

001: MGGALSTVFG SGEDATAAGT ESEPSRVLKF SSSARWQLHF NEIKESNKLL VVDFSASWCG PCRMIEPAIH AMADKFNDVD FVKLDVDELP DVAKEFNVTA
101: MPTFVLVKRG KEIERIIGAK KDELEKKVSK LRA

Arabidopsis Description

TRX2Thioredoxin H2 [Source:UniProtKB/Swiss-Prot;Acc:Q38879]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.