Factsheet for TraesCS5B01G452700.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi, unclear, cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, golgi, unclear
Any Predictor:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

golgi: 25769308
unclear: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G454800.1	Wheat	cytosol	99.24	99.24
TraesCS5A01G448200.1	Wheat	cytosol	97.71	97.71
HORVU5Hr1G107210.1	Barley	cytosol	96.95	96.95
HORVU5Hr1G107170.1	Barley	cytosol	96.95	87.59
EER90722	Sorghum	cytosol	74.81	73.68
Zm00001d034491_P001	Maize	plastid	72.52	71.43
Os03t0800700-01	Rice	plastid	70.23	68.66
GSMUA_Achr2P17710_001	Banana	cytosol	61.07	62.99
GSMUA_Achr7P16980_001	Banana	cytosol	45.04	57.28
KRH01123	Soybean	cytosol	51.91	55.28
KRH40137	Soybean	endoplasmic reticulum	54.96	54.96
KRH01124	Soybean	endoplasmic reticulum	54.2	53.38
KRH40138	Soybean	cytosol, plastid	49.62	52.0
VIT_01s0026g01460.t01	Wine grape	cytosol	47.33	51.24
CDY65333	Canola	cytosol	51.15	50.38
Bra028445.1-P	Field mustard	cytosol	50.38	49.62
CDX67442	Canola	cytosol	50.38	49.25
AT5G39950.1	Thale cress	cytosol	49.62	48.87
VIT_14s0066g02560.t01	Wine grape	cytosol	50.38	48.53
Bra040318.1-P	Field mustard	cytosol	47.33	47.69
TraesCS1B01G339000.1	Wheat	cytosol	42.75	47.46
TraesCS2B01G260500.1	Wheat	extracellular	34.35	47.37
PGSC0003DMT400003564	Potato	plastid	51.15	47.18
PGSC0003DMT400045460	Potato	cytosol	24.43	47.06
KRH74754	Soybean	cytosol	44.27	46.03
KRH40136	Soybean	endoplasmic reticulum	54.96	45.86
KRH69383	Soybean	cytosol	42.75	44.09
GSMUA_Achr7P12220_001	Banana	cytosol	38.93	43.97
KRH74753	Soybean	cytosol	41.22	43.55
TraesCS1B01G338800.1	Wheat	cytosol, golgi, plastid, unclear	41.98	43.31
Solyc05g006870.2.1	Tomato	cytosol	44.27	42.96
Solyc04g005810.2.1	Tomato	plastid	43.51	42.86
KRH01119	Soybean	cytosol	45.8	42.86
Solyc05g006830.2.1	Tomato	cytosol, plastid	43.51	42.22
CDY45144	Canola	cytosol	41.22	42.19
Bra017898.1-P	Field mustard	cytosol	41.22	42.19
CDY30901	Canola	cytosol	41.22	42.19
Bra027837.1-P	Field mustard	cytosol	41.22	42.19
KRG99185	Soybean	cytosol, plastid	38.93	42.15
KRH45834	Soybean	cytosol, plastid	38.93	42.15
AT1G59730.1	Thale cress	cytosol	41.22	41.86
PGSC0003DMT400045450	Potato	cytosol	42.75	41.48
KRH69384	Soybean	cytosol	40.46	41.41
CDY27290	Canola	cytosol	40.46	41.41
Solyc05g006860.2.1	Tomato	cytosol	41.22	40.0
CDY03743	Canola	extracellular	25.19	38.37
CDY57101	Canola	cytosol	48.09	38.18
Solyc05g006850.2.1	Tomato	cytosol	38.17	37.04
KRH69387	Soybean	plastid	38.93	36.96
Solyc02g087630.2.1	Tomato	plastid	47.33	36.69
KRH74748	Soybean	plastid	38.17	36.23
CDY23544	Canola	cytosol	39.69	35.14
CDY04457	Canola	cytosol	25.95	34.69
TraesCS1B01G132600.1	Wheat	cytosol	34.35	34.35
CDY23543	Canola	cytosol	36.64	34.29
Bra003976.1-P	Field mustard	cytosol	36.64	34.04
CDY48387	Canola	cytosol	36.64	34.04
CDY38768	Canola	cytosol, plastid	38.93	33.77
Bra016258.1-P	Field mustard	cytosol	38.93	33.77
CDY11645	Canola	cytosol, plastid	38.93	33.77
Bra003977.1-P	Field mustard	cytosol	38.17	33.56
CDY37032	Canola	cytosol	47.33	33.16
CDY48388	Canola	cytosol	36.64	32.65
AT1G69880.1	Thale cress	plastid	35.88	31.76
TraesCS1B01G311300.1	Wheat	cytosol	30.53	27.97
TraesCS2B01G505100.1	Wheat	cytosol	29.01	27.34
TraesCS3B01G453600.1	Wheat	plastid	32.06	22.22
CDY11641	Canola	plastid	20.61	13.04

Protein Annotations

MapMan:10.6.1	Gene3D:3.40.30.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0006662	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0015035	GO:GO:0019725	GO:GO:0045454	InterPro:IPR013766
PFAM:PF00085	PIRSF:PIRSF000077	PRINTS:PR00421	ScanProsite:PS00194	PFscan:PS51352	PANTHER:PTHR10438
PANTHER:PTHR10438:SF243	SUPFAM:SSF52833	InterPro:Thioredoxin	InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_CS	InterPro:Thioredoxin_domain
EnsemblPlantsGene:TraesCS5B01G452700	EnsemblPlants:TraesCS5B01G452700.1	TIGR:cd02947	:	:	:

Description

No Description!

Coordinates

chr5B:-:625522398..625524130

Molecular Weight (calculated)

14583.5 Da

IEP (calculated)

6.258

GRAVY (calculated)

-0.136

Length

131 amino acids

Sequence
(BLAST)

001: MGSFLSSLWT PPPLPGDDPD SAVVAVHSKP AWDKHWEEHR NASKLMVIDF SASWCGPCRF IEPAFKEMAS RFADALFVKI DVDELAEVAK TFRVEAMPTF
101: VLVKGGQEVS RVVGAKKDEL DRKIKTFISS T

Best Arabidopsis Sequence Match ( AT5G39950.1 )
(BLAST)

001: MGGALSTVFG SGEDATAAGT ESEPSRVLKF SSSARWQLHF NEIKESNKLL VVDFSASWCG PCRMIEPAIH AMADKFNDVD FVKLDVDELP DVAKEFNVTA
101: MPTFVLVKRG KEIERIIGAK KDELEKKVSK LRA

Arabidopsis Description

TRX2Thioredoxin H2 [Source:UniProtKB/Swiss-Prot;Acc:Q38879]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.