Factsheet for Os03t0800700-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 2
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plastid: 21433289
extracellular: 26072143
plasma membrane: 27800704
plastid: 27992503

msms PMID: 26072143 doi

B Du, Z Wei, Z Wang, X Wang, X Peng, B Du, R Chen, L Zhu, G He

State Key Laboratory of Hybrid Rice, College of Life Sciences, Wuhan University, Wuhan, 430072, China., State Key Laboratory of Hybrid Rice, College of Life Sciences, Wuhan University, Wuhan, 430072, China. Electronic address: gche@whu.edu.cn.

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

msms PMID: 21433289 doi

S Reiland, J Grossmann, K Baerenfaller, P Gehrig, A Nunes-Nesi, AR Fernie, W Gruissem, S Baginsky

Department of Biology, Plant Biotechnology, ETH Zurich, Zurich, Switzerland.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d034491_P001	Maize	plastid	73.88	74.44
EER90722	Sorghum	cytosol	72.39	72.93
HORVU5Hr1G107210.1	Barley	cytosol	70.9	72.52
TraesCS5A01G448200.1	Wheat	cytosol	70.15	71.76
TraesCS5D01G454800.1	Wheat	cytosol	69.4	70.99
TraesCS5B01G452700.1	Wheat	cytosol, golgi, unclear	68.66	70.23
HORVU5Hr1G107170.1	Barley	cytosol	70.9	65.52
Os07t0190800-01	Rice	cytosol	65.67	63.77
GSMUA_Achr2P17710_001	Banana	cytosol	57.46	60.63
GSMUA_Achr7P16980_001	Banana	cytosol	44.78	58.25
KRH01123	Soybean	cytosol	49.25	53.66
KRH40138	Soybean	cytosol, plastid	47.76	51.2
KRH40137	Soybean	endoplasmic reticulum	50.0	51.15
VIT_01s0026g01460.t01	Wine grape	cytosol	45.52	50.41
KRH01124	Soybean	endoplasmic reticulum	50.0	50.38
KRH74754	Soybean	cytosol	46.27	49.21
AT5G39950.1	Thale cress	cytosol	48.51	48.87
PGSC0003DMT400045460	Potato	cytosol	24.63	48.53
Bra040318.1-P	Field mustard	cytosol	47.01	48.46
CDY65333	Canola	cytosol	47.76	48.12
VIT_14s0066g02560.t01	Wine grape	cytosol	48.51	47.79
KRH69383	Soybean	cytosol	44.78	47.24
PGSC0003DMT400003564	Potato	plastid	50.0	47.18
Bra028445.1-P	Field mustard	cytosol	46.27	46.62
CDX67442	Canola	cytosol	46.27	46.27
KRH74753	Soybean	cytosol	41.79	45.16
Solyc04g005810.2.1	Tomato	plastid	44.03	44.36
Os07t0186000-02	Rice	extracellular	40.3	44.26
KRH40136	Soybean	endoplasmic reticulum	51.49	43.95
Solyc05g006870.2.1	Tomato	cytosol	44.03	43.7
Solyc05g006830.2.1	Tomato	cytosol, plastid	44.03	43.7
KRH69384	Soybean	cytosol	41.04	42.97
PGSC0003DMT400045450	Potato	cytosol	43.28	42.96
KRH01119	Soybean	cytosol	44.78	42.86
GSMUA_Achr7P12220_001	Banana	cytosol	36.57	42.24
Solyc05g006860.2.1	Tomato	cytosol	41.79	41.48
KRG99185	Soybean	cytosol, plastid	37.31	41.32
KRH45834	Soybean	cytosol, plastid	37.31	41.32
Bra017898.1-P	Field mustard	cytosol	38.06	39.84
Bra027837.1-P	Field mustard	cytosol	36.57	38.28
CDY27290	Canola	cytosol	36.57	38.28
CDY30901	Canola	cytosol	36.57	38.28
CDY45144	Canola	cytosol	36.57	38.28
CDY57101	Canola	cytosol	47.01	38.18
AT1G59730.1	Thale cress	cytosol	36.57	37.98
Solyc02g087630.2.1	Tomato	plastid	47.76	37.87
KRH74748	Soybean	plastid	38.81	37.68
KRH69387	Soybean	plastid	38.81	37.68
Solyc05g006850.2.1	Tomato	cytosol	37.31	37.04
CDY23543	Canola	cytosol	35.82	34.29
CDY37032	Canola	cytosol	47.76	34.22
Os05t0169000-01	Rice	cytosol	33.58	34.09
CDY48387	Canola	cytosol	35.82	34.04
Bra003976.1-P	Field mustard	cytosol	35.82	34.04
Os01t0168200-01	Rice	plasma membrane	32.84	33.59
AT1G69880.1	Thale cress	plastid	36.57	33.11
CDY03743	Canola	extracellular	20.9	32.56
CDY23544	Canola	cytosol	35.82	32.43
Bra016258.1-P	Field mustard	cytosol	35.82	31.79
CDY38768	Canola	cytosol, plastid	35.82	31.79
CDY11645	Canola	cytosol, plastid	35.82	31.79
Bra003977.1-P	Field mustard	cytosol	34.33	30.87
CDY48388	Canola	cytosol	33.58	30.61
CDY04457	Canola	cytosol	21.64	29.59
Os05t0480200-01	Rice	cytosol	29.1	28.89
Os04t0629500-01	Rice	cytosol	27.61	27.82
Os12t0280050-00	Rice	cytosol	25.37	27.64
Os01t0913000-01	Rice	plastid	29.1	20.86
CDY11641	Canola	plastid	20.15	13.04

Protein Annotations

MapMan:10.6.1	Gene3D:3.40.30.10	EntrezGene:4334453	ProteinID:AAO37523.1	ProteinID:ABF99385.1	EMBL:AK062383
ProteinID:BAF13501.1	ProteinID:BAS86888.1	ProteinID:EEE60110.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004791
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006662	GO:GO:0006950
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0015035	GO:GO:0016671	GO:GO:0019725
GO:GO:0034599	GO:GO:0045454	GO:GO:0047134	GO:GO:0055114	GO:GO:0098869	InterPro:IPR013766
EnsemblPlantsGene:Os03g0800700	EnsemblPlants:Os03t0800700-01	PFAM:PF00085	PIRSF:PIRSF000077	PRINTS:PR00421	ScanProsite:PS00194
PFscan:PS51352	PANTHER:PTHR10438	PANTHER:PTHR10438:SF243	UniProt:Q851R5	SUPFAM:SSF52833	InterPro:Thioredoxin
InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_CS	InterPro:Thioredoxin_domain	UniParc:UPI00000027ED	RefSeq:XP_015631704.1	:

Description

THIOREDOXIN H-TYPE 4Similar to Thioredoxin H-type 5 (TRX-H-5). (Os03t0800700-01)

Coordinates

chr3:-:33391465..33393588

Molecular Weight (calculated)

14796.6 Da

IEP (calculated)

5.761

GRAVY (calculated)

-0.152

Length

134 amino acids

Sequence
(BLAST)

001: MGSFFSTMFT PPPAADDGGD SRVVAVHSTA TWDEQWGAHK SNPNKLIVID FSATWCGPCR FIEPAFKDMA GRFADAVFFK IDVDELSEVA RQWKVEAMPT
101: FVLIKGGKEV SRVVGAKKDE LERKVNMFIS SSSS

Best Arabidopsis Sequence Match ( AT5G39950.1 )
(BLAST)

001: MGGALSTVFG SGEDATAAGT ESEPSRVLKF SSSARWQLHF NEIKESNKLL VVDFSASWCG PCRMIEPAIH AMADKFNDVD FVKLDVDELP DVAKEFNVTA
101: MPTFVLVKRG KEIERIIGAK KDELEKKVSK LRA

Arabidopsis Description

TRX2Thioredoxin H2 [Source:UniProtKB/Swiss-Prot;Acc:Q38879]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.