Factsheet for Os01t0168200-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

cytosol 4
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plasma membrane: 27800704

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os02t0611200-01
Os04t0498600-01
Os09t0424300-03

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G08710.1	Os02t0611200-01	AT3G02470.1	21798944
AT3G08710.1	Os04t0498600-01	AT3G02470.1	21798944
AT3G08710.1	Os09t0424300-03	AT3G02470.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os05t0169000-01	Rice	cytosol	83.21	82.58
Zm00001d039710_P004	Maize	cytosol	79.39	72.22
KXG31771	Sorghum	cytosol	82.44	72.0
GSMUA_Achr5P27870_001	Banana	cytosol	73.28	68.09
CDY35999	Canola	cytosol	67.94	63.57
CDX73940	Canola	cytosol	67.94	63.57
CDY58647	Canola	cytosol	67.18	62.86
GSMUA_Achr8P01700_001	Banana	cytosol	66.41	62.59
VIT_08s0040g00020.t01	Wine grape	cytosol	66.41	62.59
KRH00477	Soybean	cytosol	64.89	61.15
AT3G08710.1	Thale cress	cytosol	64.89	60.71
Bra040055.1-P	Field mustard	cytosol	62.6	59.85
PGSC0003DMT400076843	Potato	cytosol	37.4	59.76
CDY22165	Canola	cytosol	65.65	58.9
KRH09556	Soybean	cytosol	61.07	58.39
Solyc09g015820.2.1	Tomato	plastid	65.65	55.84
Bra001346.1-P	Field mustard	cytosol	67.94	54.27
GSMUA_AchrUn_...	Banana	cytosol, plasma membrane, plastid	64.89	51.52
KRH64869	Soybean	cytosol	59.54	50.98
KRH40706	Soybean	mitochondrion	61.83	47.93
Bra014691.1-P	Field mustard	cytosol, mitochondrion	45.04	44.03
PGSC0003DMT400059108	Potato	cytosol	46.56	43.88
Solyc03g095500.2.1	Tomato	cytosol	45.8	43.17
CDY70695	Canola	cytosol	45.04	42.75
Os05t0480200-01	Rice	cytosol	43.51	42.22
CDY27984	Canola	nucleus	67.94	42.18
CDY67121	Canola	mitochondrion	47.33	40.79
CDX67647	Canola	mitochondrion	46.56	40.4
CDY32015	Canola	mitochondrion	46.56	40.4
AT2G40790.1	Thale cress	cytosol	47.33	40.26
AT3G56420.2	Thale cress	mitochondrion	47.33	40.26
Bra007245.1-P	Field mustard	plastid	41.98	39.29
CDY27215	Canola	mitochondrion	44.27	38.93
CDX72138	Canola	mitochondrion	44.27	38.93
Os07t0186000-02	Rice	extracellular	35.88	38.52
Os03t0800700-01	Rice	plastid	33.59	32.84
Os07t0190800-01	Rice	cytosol	33.59	31.88
Os04t0629500-01	Rice	cytosol	32.06	31.58
Os12t0280050-00	Rice	cytosol	25.19	26.83
CDY00656	Canola	cytosol	68.7	24.13
Os01t0913000-01	Rice	plastid	29.01	20.32

Protein Annotations

MapMan:10.6.1	Gene3D:3.40.30.10	EntrezGene:4325189	EMBL:AK103756	ProteinID:BAB39913.1	ProteinID:BAB64819.1
ProteinID:BAB92503.1	ProteinID:BAF04041.1	ProteinID:BAS70590.1	ProteinID:EEE53937.1	GO:GO:0003674	GO:GO:0003824
GO:GO:0004791	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006662
GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0015035	GO:GO:0016671
GO:GO:0019725	GO:GO:0034599	GO:GO:0045454	GO:GO:0047134	GO:GO:0055114	GO:GO:0098869
InterPro:IPR013766	EnsemblPlantsGene:Os01g0168200	EnsemblPlants:Os01t0168200-01	PFAM:PF00085	PIRSF:PIRSF000077	PRINTS:PR00421
ScanProsite:PS00194	PFscan:PS51352	PANTHER:PTHR10438	PANTHER:PTHR10438:SF267	UniProt:Q9AS75	SUPFAM:SSF52833
InterPro:Thioredoxin	InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_CS	InterPro:Thioredoxin_domain	UniParc:UPI00000ABD12	RefSeq:XP_015625017.1

Description

THIOREDOXIN H-TYPE 7Similar to Thioredoxin-like protein. (Os01t0168200-01)

Coordinates

chr1:-:3489348..3491991

Molecular Weight (calculated)

14566.2 Da

IEP (calculated)

4.638

GRAVY (calculated)

-0.305

Length

131 amino acids

Sequence
(BLAST)

001: MGSCVGKERS DEEDKIDFKG GNVHVISNKE NWDHKIAEAN KDGKIVIANF SAAWCGPCRV IAPVYAEMSQ TYPQFMFLTI DVDELMDFSS SWDIRATPTF
101: FFLKNGEQVD KLVGANKPEL EKKVAALADS A

Best Arabidopsis Sequence Match ( AT3G08710.2 )
(BLAST)

001: MGSCVSKGKG DDDSVHNVEF SGGNVHLITT KESWDDKLAE ADRDGKIVVA NFSATWCGPC KIVAPFFIEL SEKHSSLMFL LVDVDELSDF SSSWDIKATP
101: TFFFLKNGQQ IGKLVGANKP ELQKKVTSII DSVPESPQRP

Arabidopsis Description

TRX9Thioredoxin H9 [Source:UniProtKB/Swiss-Prot;Acc:Q9C9Y6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.