Factsheet for Bra040055.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
plastid 1
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra001046.1-P
Bra021458.1-P
Bra039176.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G08710.1	Bra001046.1-P	AT3G02470.1	21798944
AT3G08710.1	Bra021458.1-P	AT3G02470.1	21798944
AT3G08710.1	Bra039176.1-P	AT3G02470.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY58647	Canola	cytosol	97.08	95.0
AT3G08710.1	Thale cress	cytosol	85.4	83.57
Bra001346.1-P	Field mustard	cytosol	86.13	71.95
KRH00477	Soybean	cytosol	70.8	69.78
VIT_08s0040g00020.t01	Wine grape	cytosol	70.8	69.78
PGSC0003DMT400076843	Potato	cytosol	40.88	68.29
KRH09556	Soybean	cytosol	62.77	62.77
Os01t0168200-01	Rice	plasma membrane	59.85	62.6
Solyc09g015820.2.1	Tomato	plastid	70.07	62.34
Zm00001d037499_P001	Maize	cytosol	59.85	61.65
TraesCS1A01G112400.1	Wheat	cytosol	58.39	61.07
TraesCS1B01G132600.1	Wheat	cytosol	58.39	61.07
TraesCS1D01G114000.1	Wheat	cytosol	58.39	61.07
GSMUA_Achr5P27870_001	Banana	cytosol	61.31	59.57
KRH64869	Soybean	cytosol	66.42	59.48
Os05t0169000-01	Rice	cytosol	56.2	58.33
EES19112	Sorghum	cytosol	56.93	58.21
GSMUA_Achr8P01700_001	Banana	cytosol	57.66	56.83
HORVU1Hr1G024700.4	Barley	cytosol	59.85	56.16
KRH40706	Soybean	mitochondrion	68.61	55.62
KXG31771	Sorghum	cytosol	59.85	54.67
Zm00001d039710_P004	Maize	cytosol	56.93	54.17
GSMUA_AchrUn_...	Banana	cytosol, plasma membrane, plastid	55.47	46.06
Bra014691.1-P	Field mustard	cytosol, mitochondrion	37.96	38.81
Bra007245.1-P	Field mustard	plastid	38.69	37.86
Bra036839.1-P	Field mustard	cytosol	31.39	37.72
Bra012872.1-P	Field mustard	cytosol	31.39	37.72
Bra027469.1-P	Field mustard	cytosol	30.66	34.15
Bra025762.1-P	Field mustard	cytosol	27.01	31.09
Bra031769.1-P	Field mustard	cytosol	28.47	30.95
Bra036335.1-P	Field mustard	cytosol	26.28	30.77
Bra014037.1-P	Field mustard	cytosol	26.28	30.51
Bra028445.1-P	Field mustard	cytosol	27.74	28.57
Bra017898.1-P	Field mustard	cytosol	25.55	27.34
Bra040318.1-P	Field mustard	cytosol	25.55	26.92
Bra027837.1-P	Field mustard	cytosol	24.09	25.78
Bra016258.1-P	Field mustard	cytosol	24.09	21.85
Bra003977.1-P	Field mustard	cytosol	22.63	20.81
Bra003976.1-P	Field mustard	cytosol	20.44	19.86
Bra023564.1-P	Field mustard	plastid	26.28	19.25
Bra021417.1-P	Field mustard	plastid	24.82	18.68
Bra040596.1-P	Field mustard	plastid	22.63	17.13

Protein Annotations

MapMan:10.6.1	Gene3D:3.40.30.10	EnsemblPlantsGene:Bra040055	EnsemblPlants:Bra040055.1	EnsemblPlants:Bra040055.1-P	GO:GO:0003674
GO:GO:0003824	GO:GO:0005575	GO:GO:0005623	GO:GO:0006662	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0015035	GO:GO:0019725	GO:GO:0045454	GO:GO:0055114	InterPro:IPR013766
UniProt:M4FG30	PFAM:PF00085	PIRSF:PIRSF000077	PRINTS:PR00421	ScanProsite:PS00194	PFscan:PS51352
PANTHER:PTHR10438	PANTHER:PTHR10438:SF267	SUPFAM:SSF52833	InterPro:Thioredoxin	InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_CS
InterPro:Thioredoxin_domain	UniParc:UPI000254457E	:	:	:	:

Description

AT3G08710 (E=7e-068) ATH9 | ATH9 (thioredoxin H-type 9)

Coordinates

chrA01:-:27746613..27747192

Molecular Weight (calculated)

15207.0 Da

IEP (calculated)

4.873

GRAVY (calculated)

-0.317

Length

137 amino acids

Sequence
(BLAST)

001: MQTQNKGDDD TIHNVDFSGG NVHLITTKES WDDKLAEAGR DGKIVIANFS ATWCGPCKML ATFYVELSEK HPSLMFLLVD VDELCDFSSS WDIKATPTFF
101: FLKNGQQIGK LVGANKPELQ KKVTSIIDSL PQSPQQP

Best Arabidopsis Sequence Match ( AT3G08710.2 )
(BLAST)

001: MGSCVSKGKG DDDSVHNVEF SGGNVHLITT KESWDDKLAE ADRDGKIVVA NFSATWCGPC KIVAPFFIEL SEKHSSLMFL LVDVDELSDF SSSWDIKATP
101: TFFFLKNGQQ IGKLVGANKP ELQKKVTSII DSVPESPQRP

Arabidopsis Description

TRX9Thioredoxin H9 [Source:UniProtKB/Swiss-Prot;Acc:Q9C9Y6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.