Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- extracellular 4
- endoplasmic reticulum 4
- vacuole 4
- plasma membrane 4
- golgi 4
- plastid 1
- cytosol 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU2Hr1G086140.5 | |
| HORVU5Hr1G064040.8 | |
| HORVU6Hr1G056110.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G08710.1 | HORVU2Hr1G086140.5 | AT3G02470.1 | 21798944 |
| AT3G08710.1 | HORVU5Hr1G064040.8 | AT3G02470.1 | 21798944 |
| AT3G08710.1 | HORVU6Hr1G056110.1 | AT3G02470.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1D01G114000.1 | Wheat | cytosol | 85.62 | 95.42 |
| TraesCS1B01G132600.1 | Wheat | cytosol | 85.62 | 95.42 |
| TraesCS1A01G112400.1 | Wheat | cytosol | 85.62 | 95.42 |
| Os05t0169000-01 | Rice | cytosol | 78.08 | 86.36 |
| Zm00001d037499_P001 | Maize | cytosol | 75.34 | 82.71 |
| EES19112 | Sorghum | cytosol | 71.23 | 77.61 |
| GSMUA_Achr5P27870_001 | Banana | cytosol | 65.07 | 67.38 |
| GSMUA_Achr8P01700_001 | Banana | cytosol | 57.53 | 60.43 |
| CDY35999 | Canola | cytosol | 57.53 | 60.0 |
| Bra040055.1-P | Field mustard | cytosol | 56.16 | 59.85 |
| CDY58647 | Canola | cytosol | 56.85 | 59.29 |
| CDX73940 | Canola | cytosol | 56.16 | 58.57 |
| AT3G08710.1 | Thale cress | cytosol | 56.16 | 58.57 |
| VIT_08s0040g00020.t01 | Wine grape | cytosol | 55.48 | 58.27 |
| KRH00477 | Soybean | cytosol | 54.79 | 57.55 |
| PGSC0003DMT400076843 | Potato | cytosol | 32.19 | 57.32 |
| KRH09556 | Soybean | cytosol | 52.05 | 55.47 |
| CDY22165 | Canola | cytosol | 54.79 | 54.79 |
| GSMUA_AchrUn_... | Banana | cytosol, plasma membrane, plastid | 60.27 | 53.33 |
| Solyc09g015820.2.1 | Tomato | plastid | 56.16 | 53.25 |
| KRH64869 | Soybean | cytosol | 53.42 | 50.98 |
| Bra001346.1-P | Field mustard | cytosol | 56.16 | 50.0 |
| KRH40706 | Soybean | mitochondrion | 54.11 | 46.75 |
| PGSC0003DMT400059108 | Potato | cytosol | 40.41 | 42.45 |
| HORVU1Hr1G069550.1 | Barley | cytosol | 37.67 | 41.98 |
| Bra014691.1-P | Field mustard | cytosol, mitochondrion | 38.36 | 41.79 |
| CDY70695 | Canola | cytosol | 39.04 | 41.3 |
| Solyc03g095500.2.1 | Tomato | cytosol | 39.04 | 41.01 |
| HORVU1Hr1G075560.1 | Barley | cytosol | 33.56 | 40.16 |
| Bra007245.1-P | Field mustard | plastid | 38.36 | 40.0 |
| CDY27984 | Canola | nucleus | 57.53 | 39.81 |
| CDY67121 | Canola | mitochondrion | 41.1 | 39.47 |
| CDY32015 | Canola | mitochondrion | 40.41 | 39.07 |
| CDX67647 | Canola | mitochondrion | 40.41 | 39.07 |
| AT3G56420.2 | Thale cress | mitochondrion | 40.41 | 38.31 |
| AT2G40790.1 | Thale cress | cytosol | 40.41 | 38.31 |
| CDX72138 | Canola | mitochondrion | 39.04 | 38.26 |
| CDY27215 | Canola | mitochondrion | 39.04 | 38.26 |
| HORVU5Hr1G107210.1 | Barley | cytosol | 30.82 | 34.35 |
| HORVU5Hr1G107170.1 | Barley | cytosol | 30.82 | 31.03 |
| HORVU6Hr1G018190.1 | Barley | mitochondrion | 17.12 | 26.88 |
| HORVU2Hr1G107990.1 | Barley | cytosol | 25.34 | 26.81 |
| CDY00656 | Canola | cytosol | 56.85 | 22.25 |
Protein Annotations
| MapMan:10.6.1 | Gene3D:3.40.30.10 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 | GO:GO:0005829 | GO:GO:0005886 | GO:GO:0006662 |
| GO:GO:0007154 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009536 | GO:GO:0009987 | GO:GO:0015035 |
| GO:GO:0016020 | GO:GO:0019725 | GO:GO:0045454 | GO:GO:0055114 | EnsemblPlantsGene:HORVU1Hr1G024700 | EnsemblPlants:HORVU1Hr1G024700.4 |
| InterPro:IPR013766 | UniProt:M0UGK2 | PFAM:PF00085 | PIRSF:PIRSF000077 | PRINTS:PR00421 | ScanProsite:PS00194 |
| PFscan:PS51352 | PANTHER:PTHR10438 | PANTHER:PTHR10438:SF267 | SUPFAM:SSF52833 | InterPro:Thioredoxin | InterPro:Thioredoxin-like_sf |
| InterPro:Thioredoxin_CS | InterPro:Thioredoxin_domain | UniParc:UPI0002956FAF | : | : | : |
Description
Thioredoxin [Source:UniProtKB/TrEMBL;Acc:M0UGK2]
Coordinates
chrchr1H:-:115486762..115488265
Molecular Weight (calculated)
16326.7 Da
IEP (calculated)
4.609
GRAVY (calculated)
-0.108
Length
146 amino acids
Sequence
(BLAST)
(BLAST)
001: MNLCYVLELP GNLYVILLSS FGQGRGIVEE KLDFKGGNVH VITTKEDWDQ KIEEANKDGK IVVANFSASW CGPCRVIAPV YAEMSKTYPQ LMFLTIDVDD
101: LMDFSSTWDI RATPTFFFLK NGQQIDKLVG ANKPELEKKV QALGDG
101: LMDFSSTWDI RATPTFFFLK NGQQIDKLVG ANKPELEKKV QALGDG
001: MGSCVSKGKG DDDSVHNVEF SGGNVHLITT KESWDDKLAE ADRDGKIVVA NFSATWCGPC KIVAPFFIEL SEKHSSLMFL LVDVDELSDF SSSWDIKATP
101: TFFFLKNGQQ IGKLVGANKP ELQKKVTSII DSVPESPQRP
101: TFFFLKNGQQ IGKLVGANKP ELQKKVTSII DSVPESPQRP
Arabidopsis Description
TRX9Thioredoxin H9 [Source:UniProtKB/Swiss-Prot;Acc:Q9C9Y6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.