Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 2
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY35999 | Canola | cytosol | 66.35 | 100.0 |
| AT3G08710.1 | Thale cress | cytosol | 61.14 | 92.14 |
| CDX73940 | Canola | cytosol | 61.14 | 92.14 |
| CDY58647 | Canola | cytosol | 59.72 | 90.0 |
| CDY22165 | Canola | cytosol | 59.24 | 85.62 |
| VIT_08s0040g00020.t01 | Wine grape | cytosol | 48.34 | 73.38 |
| KRH00477 | Soybean | cytosol | 47.87 | 72.66 |
| PGSC0003DMT400076843 | Potato | cytosol | 26.54 | 68.29 |
| Os01t0168200-01 | Rice | plasma membrane | 42.18 | 67.94 |
| KRH09556 | Soybean | cytosol | 43.6 | 67.15 |
| TraesCS1D01G114000.1 | Wheat | cytosol | 40.76 | 65.65 |
| TraesCS1B01G132600.1 | Wheat | cytosol | 40.76 | 65.65 |
| TraesCS1A01G112400.1 | Wheat | cytosol | 40.76 | 65.65 |
| Solyc09g015820.2.1 | Tomato | plastid | 47.87 | 65.58 |
| Zm00001d037499_P001 | Maize | cytosol | 40.28 | 63.91 |
| Os05t0169000-01 | Rice | cytosol | 38.86 | 62.12 |
| KRH64869 | Soybean | cytosol | 45.02 | 62.09 |
| GSMUA_Achr5P27870_001 | Banana | cytosol | 40.28 | 60.28 |
| EES19112 | Sorghum | cytosol | 37.91 | 59.7 |
| KRH40706 | Soybean | mitochondrion | 47.39 | 59.17 |
| GSMUA_Achr8P01700_001 | Banana | cytosol | 38.86 | 58.99 |
| HORVU1Hr1G024700.4 | Barley | cytosol | 39.81 | 57.53 |
| KXG31771 | Sorghum | cytosol | 39.34 | 55.33 |
| Zm00001d039710_P004 | Maize | cytosol | 37.44 | 54.86 |
| GSMUA_AchrUn_... | Banana | cytosol, plasma membrane, plastid | 37.44 | 47.88 |
| CDY00656 | Canola | cytosol | 72.04 | 40.75 |
| CDY70695 | Canola | cytosol | 26.54 | 40.58 |
| CDY28996 | Canola | cytosol | 21.8 | 40.35 |
| CDX77974 | Canola | cytosol | 21.8 | 40.35 |
| CDX90669 | Canola | cytosol | 21.8 | 40.35 |
| CDX72138 | Canola | mitochondrion | 28.44 | 40.27 |
| CDY27215 | Canola | mitochondrion | 28.44 | 40.27 |
| CDY32015 | Canola | mitochondrion | 28.44 | 39.74 |
| CDX67647 | Canola | mitochondrion | 28.44 | 39.74 |
| CDY67121 | Canola | mitochondrion | 28.44 | 39.47 |
| CDY43592 | Canola | cytosol | 20.85 | 35.77 |
| CDY32970 | Canola | cytosol | 20.85 | 35.77 |
| CDY34470 | Canola | cytosol | 9.48 | 34.48 |
| CDY53958 | Canola | cytosol | 18.96 | 34.19 |
| CDY36029 | Canola | cytosol | 18.48 | 33.05 |
| CDY27290 | Canola | cytosol | 19.43 | 32.03 |
| CDY29406 | Canola | cytosol | 18.01 | 31.93 |
| CDY39355 | Canola | cytosol | 18.01 | 31.93 |
| CDY34646 | Canola | cytosol | 18.48 | 30.95 |
| CDX67442 | Canola | cytosol | 19.43 | 30.6 |
| CDY45144 | Canola | cytosol | 18.48 | 30.47 |
| CDY30901 | Canola | cytosol | 18.48 | 30.47 |
| CDY65333 | Canola | cytosol | 18.96 | 30.08 |
| CDY03743 | Canola | extracellular | 10.9 | 26.74 |
| CDY38768 | Canola | cytosol, plastid | 17.54 | 24.5 |
| CDY11645 | Canola | cytosol, plastid | 17.54 | 24.5 |
| CDY04457 | Canola | cytosol | 10.9 | 23.47 |
| CDY69984 | Canola | plastid | 19.91 | 22.58 |
| CDY38116 | Canola | plastid | 19.91 | 22.46 |
| CDY57101 | Canola | cytosol | 17.54 | 22.42 |
| CDY23544 | Canola | cytosol | 15.64 | 22.3 |
| CDX73752 | Canola | cytosol, mitochondrion | 23.22 | 22.27 |
| CDY48388 | Canola | cytosol | 15.17 | 21.77 |
| CDY23543 | Canola | cytosol | 14.22 | 21.43 |
| CDY37032 | Canola | cytosol | 18.96 | 21.39 |
| CDY48387 | Canola | cytosol | 14.22 | 21.28 |
| CDY53739 | Canola | plastid | 17.54 | 20.44 |
| CDY51539 | Canola | plastid | 16.59 | 19.44 |
| CDY28704 | Canola | plastid | 15.64 | 18.33 |
| CDY11641 | Canola | plastid | 9.0 | 9.18 |
Protein Annotations
| MapMan:10.6.1 | Gene3D:3.40.30.10 | GO:A0A078GS36 | UniProt:A0A078GS36 | EnsemblPlants:CDY27984 | ProteinID:CDY27984 |
| ProteinID:CDY27984.1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005575 | GO:GO:0005623 | GO:GO:0006662 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0015035 | GO:GO:0019725 | GO:GO:0045454 |
| GO:GO:0055114 | EnsemblPlantsGene:GSBRNA2T00038908001 | InterPro:IPR013766 | PFAM:PF00085 | PRINTS:PR00421 | ScanProsite:PS00194 |
| PFscan:PS51352 | PANTHER:PTHR10438 | PANTHER:PTHR10438:SF267 | SUPFAM:SSF52833 | InterPro:Thioredoxin | InterPro:Thioredoxin-like_sf |
| InterPro:Thioredoxin_CS | InterPro:Thioredoxin_domain | UniParc:UPI0004EDEB1D | SEG:seg | : | : |
Description
BnaC05g43860DBnaC05g43860D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GS36]
Coordinates
chrLK032213:-:86384..88498
Molecular Weight (calculated)
23613.2 Da
IEP (calculated)
9.437
GRAVY (calculated)
-0.433
Length
211 amino acids
Sequence
(BLAST)
(BLAST)
001: MRSNTNKKTS ESNAEKKGSD NLVKITNKTF IIALRSFAIP KSNRIFAKKR KKKKEESVLY SVFKFTEHFI QMGSCVSKDT GDDDSVHNVD FSGGNVHLIT
101: TKESWDEKLA EAGRDGKIVI ANFSATWCGP CKIVAPFYVE LSEKHPSLMF LLVDVDELSD FSSTWDIKAT PTFFFLKNGE QIGKLVGANK PELQKKVTSI
201: IDSVPESPQR P
101: TKESWDEKLA EAGRDGKIVI ANFSATWCGP CKIVAPFYVE LSEKHPSLMF LLVDVDELSD FSSTWDIKAT PTFFFLKNGE QIGKLVGANK PELQKKVTSI
201: IDSVPESPQR P
001: MGSCVSKGKG DDDSVHNVEF SGGNVHLITT KESWDDKLAE ADRDGKIVVA NFSATWCGPC KIVAPFFIEL SEKHSSLMFL LVDVDELSDF SSSWDIKATP
101: TFFFLKNGQQ IGKLVGANKP ELQKKVTSII DSVPESPQRP
101: TFFFLKNGQQ IGKLVGANKP ELQKKVTSII DSVPESPQRP
Arabidopsis Description
TRX9Thioredoxin H9 [Source:UniProtKB/Swiss-Prot;Acc:Q9C9Y6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.