Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT3G08710.1 | Thale cress | cytosol | 92.14 | 92.14 |
| CDX73940 | Canola | cytosol | 92.14 | 92.14 |
| CDY58647 | Canola | cytosol | 90.0 | 90.0 |
| CDY22165 | Canola | cytosol | 87.14 | 83.56 |
| VIT_08s0040g00020.t01 | Wine grape | cytosol | 72.86 | 73.38 |
| KRH00477 | Soybean | cytosol | 72.14 | 72.66 |
| PGSC0003DMT400076843 | Potato | cytosol | 40.0 | 68.29 |
| Os01t0168200-01 | Rice | plasma membrane | 63.57 | 67.94 |
| KRH09556 | Soybean | cytosol | 65.71 | 67.15 |
| CDY27984 | Canola | nucleus | 100.0 | 66.35 |
| TraesCS1D01G114000.1 | Wheat | cytosol | 61.43 | 65.65 |
| TraesCS1B01G132600.1 | Wheat | cytosol | 61.43 | 65.65 |
| TraesCS1A01G112400.1 | Wheat | cytosol | 61.43 | 65.65 |
| Solyc09g015820.2.1 | Tomato | plastid | 72.14 | 65.58 |
| Zm00001d037499_P001 | Maize | cytosol | 60.71 | 63.91 |
| Os05t0169000-01 | Rice | cytosol | 58.57 | 62.12 |
| KRH64869 | Soybean | cytosol | 67.86 | 62.09 |
| GSMUA_Achr5P27870_001 | Banana | cytosol | 60.71 | 60.28 |
| EES19112 | Sorghum | cytosol | 57.14 | 59.7 |
| GSMUA_Achr8P01700_001 | Banana | cytosol | 58.57 | 58.99 |
| KRH40706 | Soybean | mitochondrion | 70.71 | 58.58 |
| HORVU1Hr1G024700.4 | Barley | cytosol | 60.0 | 57.53 |
| KXG31771 | Sorghum | cytosol | 59.29 | 55.33 |
| Zm00001d039710_P004 | Maize | cytosol | 56.43 | 54.86 |
| GSMUA_AchrUn_... | Banana | cytosol, plasma membrane, plastid | 56.43 | 47.88 |
| CDY70695 | Canola | cytosol | 40.0 | 40.58 |
| CDX77974 | Canola | cytosol | 32.86 | 40.35 |
| CDX90669 | Canola | cytosol | 32.86 | 40.35 |
| CDY28996 | Canola | cytosol | 32.86 | 40.35 |
| CDX72138 | Canola | mitochondrion | 42.86 | 40.27 |
| CDY27215 | Canola | mitochondrion | 42.86 | 40.27 |
| CDY32015 | Canola | mitochondrion | 42.86 | 39.74 |
| CDX67647 | Canola | mitochondrion | 42.86 | 39.74 |
| CDY67121 | Canola | mitochondrion | 42.86 | 39.47 |
| CDY43592 | Canola | cytosol | 31.43 | 35.77 |
| CDY32970 | Canola | cytosol | 31.43 | 35.77 |
| CDY34470 | Canola | cytosol | 14.29 | 34.48 |
| CDY00656 | Canola | cytosol | 91.43 | 34.32 |
| CDY53958 | Canola | cytosol | 28.57 | 34.19 |
| CDY36029 | Canola | cytosol | 27.86 | 33.05 |
| CDY27290 | Canola | cytosol | 29.29 | 32.03 |
| CDY29406 | Canola | cytosol | 27.14 | 31.93 |
| CDY39355 | Canola | cytosol | 27.14 | 31.93 |
| CDY34646 | Canola | cytosol | 27.86 | 30.95 |
| CDX67442 | Canola | cytosol | 29.29 | 30.6 |
| CDY45144 | Canola | cytosol | 27.86 | 30.47 |
| CDY30901 | Canola | cytosol | 27.86 | 30.47 |
| CDY65333 | Canola | cytosol | 28.57 | 30.08 |
| CDY03743 | Canola | extracellular | 16.43 | 26.74 |
| CDY38768 | Canola | cytosol, plastid | 26.43 | 24.5 |
| CDY11645 | Canola | cytosol, plastid | 26.43 | 24.5 |
| CDY04457 | Canola | cytosol | 16.43 | 23.47 |
| CDY69984 | Canola | plastid | 30.0 | 22.58 |
| CDY38116 | Canola | plastid | 30.0 | 22.46 |
| CDY23544 | Canola | cytosol | 23.57 | 22.3 |
| CDY57101 | Canola | cytosol | 25.71 | 21.82 |
| CDY48388 | Canola | cytosol | 22.86 | 21.77 |
| CDY23543 | Canola | cytosol | 21.43 | 21.43 |
| CDY37032 | Canola | cytosol | 28.57 | 21.39 |
| CDX73752 | Canola | cytosol, mitochondrion | 33.57 | 21.36 |
| CDY48387 | Canola | cytosol | 21.43 | 21.28 |
| CDY53739 | Canola | plastid | 26.43 | 20.44 |
| CDY51539 | Canola | plastid | 25.0 | 19.44 |
| CDY28704 | Canola | plastid | 23.57 | 18.33 |
| CDY11641 | Canola | plastid | 13.57 | 9.18 |
Protein Annotations
| MapMan:10.6.1 | Gene3D:3.40.30.10 | GO:A0A078HF19 | UniProt:A0A078HF19 | EnsemblPlants:CDY35999 | ProteinID:CDY35999 |
| ProteinID:CDY35999.1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005575 | GO:GO:0005623 | GO:GO:0006662 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0015035 | GO:GO:0019725 | GO:GO:0045454 |
| GO:GO:0055114 | EnsemblPlantsGene:GSBRNA2T00059561001 | InterPro:IPR013766 | PFAM:PF00085 | PIRSF:PIRSF000077 | PRINTS:PR00421 |
| ScanProsite:PS00194 | PFscan:PS51352 | PANTHER:PTHR10438 | PANTHER:PTHR10438:SF267 | SUPFAM:SSF52833 | InterPro:Thioredoxin |
| InterPro:Thioredoxin-like_sf | InterPro:Thioredoxin_CS | InterPro:Thioredoxin_domain | UniParc:UPI0004EB8C9C | : | : |
Description
BnaA05g29510DThioredoxin [Source:UniProtKB/TrEMBL;Acc:A0A078HF19]
Coordinates
chrLK032364:+:350399..351300
Molecular Weight (calculated)
15349.1 Da
IEP (calculated)
4.627
GRAVY (calculated)
-0.241
Length
140 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSCVSKDTG DDDSVHNVDF SGGNVHLITT KESWDEKLAE AGRDGKIVIA NFSATWCGPC KIVAPFYVEL SEKHPSLMFL LVDVDELSDF SSTWDIKATP
101: TFFFLKNGEQ IGKLVGANKP ELQKKVTSII DSVPESPQRP
101: TFFFLKNGEQ IGKLVGANKP ELQKKVTSII DSVPESPQRP
001: MGSCVSKGKG DDDSVHNVEF SGGNVHLITT KESWDDKLAE ADRDGKIVVA NFSATWCGPC KIVAPFFIEL SEKHSSLMFL LVDVDELSDF SSSWDIKATP
101: TFFFLKNGQQ IGKLVGANKP ELQKKVTSII DSVPESPQRP
101: TFFFLKNGQQ IGKLVGANKP ELQKKVTSII DSVPESPQRP
Arabidopsis Description
TRX9Thioredoxin H9 [Source:UniProtKB/Swiss-Prot;Acc:Q9C9Y6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.