Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra036335.1-P | Field mustard | cytosol | 98.29 | 98.29 |
| CDY36029 | Canola | cytosol | 91.45 | 90.68 |
| AT1G45145.1 | Thale cress | cytosol | 80.34 | 79.66 |
| CDY32970 | Canola | cytosol | 69.23 | 65.85 |
| CDY43592 | Canola | cytosol | 68.38 | 65.04 |
| CDY39355 | Canola | cytosol | 65.81 | 64.71 |
| CDY29406 | Canola | cytosol | 65.81 | 64.71 |
| CDX77974 | Canola | cytosol | 60.68 | 62.28 |
| CDX90669 | Canola | cytosol | 60.68 | 62.28 |
| CDY28996 | Canola | cytosol | 60.68 | 62.28 |
| CDY34470 | Canola | cytosol | 29.91 | 60.34 |
| OQU78269 | Sorghum | cytosol | 61.54 | 57.14 |
| HORVU1Hr1G075560.1 | Barley | cytosol | 58.97 | 56.56 |
| TraesCS1D01G327500.1 | Wheat | cytosol, plastid | 57.27 | 56.3 |
| Zm00001d038652_P003 | Maize | cytosol | 61.54 | 56.25 |
| TraesCS1B01G339000.1 | Wheat | cytosol | 56.41 | 55.93 |
| TraesCS1B01G338800.1 | Wheat | cytosol, golgi, plastid, unclear | 57.27 | 52.76 |
| TraesCS1A01G325600.1 | Wheat | cytosol | 58.12 | 52.31 |
| TraesCS7A01G562100.1 | Wheat | cytosol | 41.03 | 45.28 |
| TraesCS7D01G001000.1 | Wheat | cytosol | 42.73 | 44.25 |
| CDY65333 | Canola | cytosol | 44.44 | 39.1 |
| CDX67442 | Canola | cytosol | 43.59 | 38.06 |
| CDY23543 | Canola | cytosol | 39.32 | 32.86 |
| CDY27290 | Canola | cytosol | 35.9 | 32.81 |
| CDY48387 | Canola | cytosol | 39.32 | 32.62 |
| CDX73752 | Canola | cytosol, mitochondrion | 60.68 | 32.27 |
| CDY48388 | Canola | cytosol | 39.32 | 31.29 |
| CDY45144 | Canola | cytosol | 34.19 | 31.25 |
| CDY30901 | Canola | cytosol | 34.19 | 31.25 |
| CDY23544 | Canola | cytosol | 39.32 | 31.08 |
| CDY34646 | Canola | cytosol | 33.33 | 30.95 |
| CDY70695 | Canola | cytosol | 35.9 | 30.43 |
| CDY57101 | Canola | cytosol | 42.73 | 30.3 |
| CDY67121 | Canola | mitochondrion | 37.61 | 28.95 |
| CDY35999 | Canola | cytosol | 34.19 | 28.57 |
| CDY03743 | Canola | extracellular | 20.51 | 27.91 |
| CDX73940 | Canola | cytosol | 33.33 | 27.86 |
| CDX67647 | Canola | mitochondrion | 35.9 | 27.81 |
| CDY11645 | Canola | cytosol, plastid | 35.9 | 27.81 |
| CDY32015 | Canola | mitochondrion | 35.9 | 27.81 |
| CDY38768 | Canola | cytosol, plastid | 35.9 | 27.81 |
| CDY22165 | Canola | cytosol | 34.19 | 27.4 |
| CDY27215 | Canola | mitochondrion | 34.19 | 26.85 |
| CDX72138 | Canola | mitochondrion | 34.19 | 26.85 |
| CDY37032 | Canola | cytosol | 42.73 | 26.74 |
| CDY58647 | Canola | cytosol | 31.62 | 26.43 |
| CDY04457 | Canola | cytosol | 20.51 | 24.49 |
| CDY27984 | Canola | nucleus | 34.19 | 18.96 |
| CDY69984 | Canola | plastid | 29.91 | 18.82 |
| CDY38116 | Canola | plastid | 29.06 | 18.18 |
| CDY28704 | Canola | plastid | 27.35 | 17.78 |
| CDY51539 | Canola | plastid | 27.35 | 17.78 |
| CDY53739 | Canola | plastid | 27.35 | 17.68 |
| CDY11641 | Canola | plastid | 19.66 | 11.11 |
| CDY00656 | Canola | cytosol | 32.48 | 10.19 |
Protein Annotations
| MapMan:10.6.1 | MapMan:18.7.2 | Gene3D:3.40.30.10 | GO:A0A078IY70 | UniProt:A0A078IY70 | EnsemblPlants:CDY53958 |
| ProteinID:CDY53958 | ProteinID:CDY53958.1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005575 | GO:GO:0005623 |
| GO:GO:0006662 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0015035 | GO:GO:0019725 |
| GO:GO:0045454 | GO:GO:0055114 | EnsemblPlantsGene:GSBRNA2T00011813001 | InterPro:IPR013766 | PFAM:PF00085 | PIRSF:PIRSF000077 |
| PRINTS:PR00421 | ScanProsite:PS00194 | PFscan:PS51352 | PANTHER:PTHR10438 | PANTHER:PTHR10438:SF293 | SUPFAM:SSF52833 |
| InterPro:Thioredoxin | InterPro:Thioredoxin-like_sf | InterPro:Thioredoxin_CS | InterPro:Thioredoxin_domain | UniParc:UPI0004EE66F8 | : |
Description
BnaCnng25840DThioredoxin [Source:UniProtKB/TrEMBL;Acc:A0A078IY70]
Coordinates
chrLK033256:+:61707..62220
Molecular Weight (calculated)
13173.1 Da
IEP (calculated)
5.678
GRAVY (calculated)
0.158
Length
117 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGEGEVIAC HTIEVWNEQI KAANDSKKLI VIDFTATWCP PCRFIAPVFV EMAKKFLNVV FFKIDVDELQ SVAKEFKVEA MPTFLFMREG EIVDRVVGAR
101: KEEIHQTLMK HGGVASA
101: KEEIHQTLMK HGGVASA
001: MAGEGEVIAC HTLEVWNEKV KDANESKKLI VIDFTASWCP PCRFIAPVFA EMAKKFTNVV FFKIDVDELQ AVAQEFKVEA MPTFVFMKEG NIIDRVVGAA
101: KDEINEKLMK HGGLVASA
101: KDEINEKLMK HGGLVASA
Arabidopsis Description
TRX5Thioredoxin H5 [Source:UniProtKB/Swiss-Prot;Acc:Q39241]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.