Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra040055.1-P | Field mustard | cytosol | 95.0 | 97.08 |
| CDY35999 | Canola | cytosol | 90.0 | 90.0 |
| CDX73940 | Canola | cytosol | 89.29 | 89.29 |
| CDY22165 | Canola | cytosol | 92.86 | 89.04 |
| AT3G08710.1 | Thale cress | cytosol | 88.57 | 88.57 |
| KRH00477 | Soybean | cytosol | 74.29 | 74.82 |
| VIT_08s0040g00020.t01 | Wine grape | cytosol | 72.14 | 72.66 |
| PGSC0003DMT400076843 | Potato | cytosol | 40.0 | 68.29 |
| Os01t0168200-01 | Rice | plasma membrane | 62.86 | 67.18 |
| KRH09556 | Soybean | cytosol | 64.29 | 65.69 |
| TraesCS1D01G114000.1 | Wheat | cytosol | 60.71 | 64.89 |
| TraesCS1B01G132600.1 | Wheat | cytosol | 60.71 | 64.89 |
| TraesCS1A01G112400.1 | Wheat | cytosol | 60.71 | 64.89 |
| Zm00001d037499_P001 | Maize | cytosol | 61.43 | 64.66 |
| Solyc09g015820.2.1 | Tomato | plastid | 70.71 | 64.29 |
| GSMUA_Achr5P27870_001 | Banana | cytosol | 62.86 | 62.41 |
| Os05t0169000-01 | Rice | cytosol | 58.57 | 62.12 |
| EES19112 | Sorghum | cytosol | 58.57 | 61.19 |
| KRH64869 | Soybean | cytosol | 66.43 | 60.78 |
| KRH40706 | Soybean | mitochondrion | 72.14 | 59.76 |
| CDY27984 | Canola | nucleus | 90.0 | 59.72 |
| GSMUA_Achr8P01700_001 | Banana | cytosol | 59.29 | 59.71 |
| HORVU1Hr1G024700.4 | Barley | cytosol | 59.29 | 56.85 |
| KXG31771 | Sorghum | cytosol | 60.0 | 56.0 |
| Zm00001d039710_P004 | Maize | cytosol | 57.14 | 55.56 |
| GSMUA_AchrUn_... | Banana | cytosol, plasma membrane, plastid | 56.43 | 47.88 |
| CDX72138 | Canola | mitochondrion | 41.43 | 38.93 |
| CDY27215 | Canola | mitochondrion | 41.43 | 38.93 |
| CDX77974 | Canola | cytosol | 31.43 | 38.6 |
| CDX90669 | Canola | cytosol | 31.43 | 38.6 |
| CDY28996 | Canola | cytosol | 31.43 | 38.6 |
| CDX67647 | Canola | mitochondrion | 41.43 | 38.41 |
| CDY32015 | Canola | mitochondrion | 41.43 | 38.41 |
| CDY70695 | Canola | cytosol | 37.86 | 38.41 |
| CDY67121 | Canola | mitochondrion | 41.43 | 38.16 |
| CDY32970 | Canola | cytosol | 30.71 | 34.96 |
| CDY43592 | Canola | cytosol | 30.71 | 34.96 |
| CDY00656 | Canola | cytosol | 88.57 | 33.24 |
| CDY39355 | Canola | cytosol | 27.14 | 31.93 |
| CDY29406 | Canola | cytosol | 27.14 | 31.93 |
| CDY53958 | Canola | cytosol | 26.43 | 31.62 |
| CDY34470 | Canola | cytosol | 12.86 | 31.03 |
| CDY34646 | Canola | cytosol | 27.86 | 30.95 |
| CDX67442 | Canola | cytosol | 29.29 | 30.6 |
| CDY36029 | Canola | cytosol | 25.71 | 30.51 |
| CDY65333 | Canola | cytosol | 28.57 | 30.08 |
| CDY27290 | Canola | cytosol | 27.14 | 29.69 |
| CDY45144 | Canola | cytosol | 26.43 | 28.91 |
| CDY30901 | Canola | cytosol | 25.71 | 28.12 |
| CDY38768 | Canola | cytosol, plastid | 26.43 | 24.5 |
| CDY11645 | Canola | cytosol, plastid | 26.43 | 24.5 |
| CDY03743 | Canola | extracellular | 15.0 | 24.42 |
| CDY23544 | Canola | cytosol | 25.0 | 23.65 |
| CDY48388 | Canola | cytosol | 24.29 | 23.13 |
| CDY23543 | Canola | cytosol | 22.14 | 22.14 |
| CDY69984 | Canola | plastid | 29.29 | 22.04 |
| CDY48387 | Canola | cytosol | 22.14 | 21.99 |
| CDY38116 | Canola | plastid | 29.29 | 21.93 |
| CDY04457 | Canola | cytosol | 15.0 | 21.43 |
| CDY37032 | Canola | cytosol | 28.57 | 21.39 |
| CDY57101 | Canola | cytosol | 25.0 | 21.21 |
| CDX73752 | Canola | cytosol, mitochondrion | 32.14 | 20.45 |
| CDY53739 | Canola | plastid | 26.43 | 20.44 |
| CDY51539 | Canola | plastid | 24.29 | 18.89 |
| CDY28704 | Canola | plastid | 22.86 | 17.78 |
| CDY11641 | Canola | plastid | 14.29 | 9.66 |
Protein Annotations
| MapMan:10.6.1 | Gene3D:3.40.30.10 | GO:A0A078J669 | UniProt:A0A078J669 | EnsemblPlants:CDY58647 | ProteinID:CDY58647 |
| ProteinID:CDY58647.1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005575 | GO:GO:0005623 | GO:GO:0006662 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0015035 | GO:GO:0019725 | GO:GO:0045454 |
| GO:GO:0055114 | EnsemblPlantsGene:GSBRNA2T00024978001 | InterPro:IPR013766 | PFAM:PF00085 | PRINTS:PR00421 | ScanProsite:PS00194 |
| PFscan:PS51352 | PANTHER:PTHR10438 | PANTHER:PTHR10438:SF267 | SUPFAM:SSF52833 | InterPro:Thioredoxin | InterPro:Thioredoxin-like_sf |
| InterPro:Thioredoxin_CS | InterPro:Thioredoxin_domain | UniParc:UPI0004EE109D | : | : | : |
Description
BnaA01g32310DBnaA01g32310D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J669]
Coordinates
chrLK033686:+:12737..13458
Molecular Weight (calculated)
15411.3 Da
IEP (calculated)
5.160
GRAVY (calculated)
-0.249
Length
140 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSCVSKNKG DDDTIHNVDF SGGNVHLITT KESWDDKLAE AGRDGKIVIA NFSATWCGPC KMLATFYVEL SEKHPSLMFL LVDVDELCDF SSSWDIKATP
101: TFFFLKNGQQ IGKLVGANKP ELQKKVTSII DSLPQSPQQP
101: TFFFLKNGQQ IGKLVGANKP ELQKKVTSII DSLPQSPQQP
001: MGSCVSKGKG DDDSVHNVEF SGGNVHLITT KESWDDKLAE ADRDGKIVVA NFSATWCGPC KIVAPFFIEL SEKHSSLMFL LVDVDELSDF SSSWDIKATP
101: TFFFLKNGQQ IGKLVGANKP ELQKKVTSII DSVPESPQRP
101: TFFFLKNGQQ IGKLVGANKP ELQKKVTSII DSVPESPQRP
Arabidopsis Description
TRX9Thioredoxin H9 [Source:UniProtKB/Swiss-Prot;Acc:Q9C9Y6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.