Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, plastid, cytosol
Predictor Summary:
Predictor Summary:
- extracellular 4
- endoplasmic reticulum 5
- vacuole 4
- plasma membrane 4
- golgi 4
- plastid 2
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cytosol:
27618038
plasma membrane: 27618038 plastid: 27618038 |
gfp PMID:
27618038
doi
Key Laboratory of Plant Resources Conservation and Sustainable Utilization/Guangdong Provincial Key Laboratory of Applied Botany, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou 510650, China. 2004370322@163.com., Key Laboratory of Plant Resources Conservation and Sustainable Utilization/Guangdong Provincial Key Laboratory of Applied Botany, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou 510650, China. ddzhang@scbg.ac.cn., Key Laboratory of Plant Resources Conservation and Sustainable Utilization/Guangdong Provincial Key Laboratory of Applied Botany, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou 510650, China. hlingyan@scbg.ac.cn., Key Laboratory of Plant Resources Conservation and Sustainable Utilization/Guangdong Provincial Key Laboratory of Applied Botany, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou 510650, China. liqing209@126.com., Key Laboratory of Plant Resources Conservation and Sustainable Utilization/Guangdong Provincial Key Laboratory of Applied Botany, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou 510650, China. xiangzi13145206@163.com., Key Laboratory of Plant Resources Conservation and Sustainable Utilization/Guangdong Provincial Key Laboratory of Applied Botany, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou 510650, China. xwduan@scbg.ac.cn., Key Laboratory of Plant Resources Conservation and Sustainable Utilization/Guangdong Provincial Key Laboratory of Applied Botany, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou 510650, China. ymjiang@scbg.ac.cn.
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr9P18460_001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G08710.1 | GSMUA_Achr9P18460_001 | AT3G02470.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1D01G114000.1 | Wheat | cytosol | 53.33 | 67.18 |
| TraesCS1B01G132600.1 | Wheat | cytosol | 53.33 | 67.18 |
| TraesCS1A01G112400.1 | Wheat | cytosol | 53.33 | 67.18 |
| GSMUA_Achr5P27870_001 | Banana | cytosol | 56.36 | 65.96 |
| Os05t0169000-01 | Rice | cytosol | 52.12 | 65.15 |
| Os01t0168200-01 | Rice | plasma membrane | 51.52 | 64.89 |
| Zm00001d037499_P001 | Maize | cytosol | 51.52 | 63.91 |
| GSMUA_Achr8P01700_001 | Banana | cytosol | 52.12 | 61.87 |
| EES19112 | Sorghum | cytosol | 49.7 | 61.19 |
| HORVU1Hr1G024700.4 | Barley | cytosol | 53.33 | 60.27 |
| Zm00001d039710_P004 | Maize | cytosol | 50.3 | 57.64 |
| KXG31771 | Sorghum | cytosol | 52.12 | 57.33 |
| KRH00477 | Soybean | cytosol | 47.88 | 56.83 |
| CDX73940 | Canola | cytosol | 47.88 | 56.43 |
| CDY35999 | Canola | cytosol | 47.88 | 56.43 |
| CDY58647 | Canola | cytosol | 47.88 | 56.43 |
| AT3G08710.1 | Thale cress | cytosol | 47.88 | 56.43 |
| VIT_08s0040g00020.t01 | Wine grape | cytosol | 47.27 | 56.12 |
| Bra040055.1-P | Field mustard | cytosol | 46.06 | 55.47 |
| PGSC0003DMT400076843 | Potato | cytosol | 27.27 | 54.88 |
| KRH09556 | Soybean | cytosol | 44.85 | 54.01 |
| CDY22165 | Canola | cytosol | 47.27 | 53.42 |
| Solyc09g015820.2.1 | Tomato | plastid | 48.48 | 51.95 |
| KRH64869 | Soybean | cytosol | 46.67 | 50.33 |
| Bra001346.1-P | Field mustard | cytosol | 47.88 | 48.17 |
| PGSC0003DMT400059108 | Potato | cytosol | 40.0 | 47.48 |
| Solyc03g095500.2.1 | Tomato | cytosol | 39.39 | 46.76 |
| KRH40706 | Soybean | mitochondrion | 47.88 | 46.75 |
| Bra014691.1-P | Field mustard | cytosol, mitochondrion | 34.55 | 42.54 |
| CDY70695 | Canola | cytosol | 35.15 | 42.03 |
| GSMUA_Achr4P22400_001 | Banana | cytosol, unclear | 28.48 | 41.23 |
| Bra007245.1-P | Field mustard | plastid | 34.55 | 40.71 |
| CDY67121 | Canola | mitochondrion | 36.97 | 40.13 |
| CDX67647 | Canola | mitochondrion | 36.36 | 39.74 |
| CDY32015 | Canola | mitochondrion | 36.36 | 39.74 |
| AT3G56420.2 | Thale cress | mitochondrion | 36.97 | 39.61 |
| CDX72138 | Canola | mitochondrion | 35.15 | 38.93 |
| CDY27215 | Canola | mitochondrion | 35.15 | 38.93 |
| CDY27984 | Canola | nucleus | 47.88 | 37.44 |
| AT2G40790.1 | Thale cress | cytosol | 33.94 | 36.36 |
| GSMUA_Achr2P17610_001 | Banana | cytosol | 23.64 | 34.21 |
| GSMUA_Achr9P10960_001 | Banana | mitochondrion, plastid | 23.03 | 30.65 |
| GSMUA_Achr2P17710_001 | Banana | cytosol | 22.42 | 29.13 |
| GSMUA_Achr7P16980_001 | Banana | cytosol | 16.36 | 26.21 |
| GSMUA_Achr9P30140_001 | Banana | cytosol | 21.21 | 26.12 |
| GSMUA_Achr5P26380_001 | Banana | cytosol | 18.79 | 24.03 |
| GSMUA_Achr7P12220_001 | Banana | cytosol | 15.15 | 21.55 |
| CDY00656 | Canola | cytosol | 48.48 | 21.45 |
| GSMUA_Achr8P01040_001 | Banana | plastid | 21.82 | 20.11 |
| GSMUA_Achr11P... | Banana | mitochondrion | 11.52 | 11.8 |
Protein Annotations
| MapMan:10.6.1 | Gene3D:3.40.30.10 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005575 | GO:GO:0005623 |
| GO:GO:0006662 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0015035 | GO:GO:0019725 |
| GO:GO:0045454 | GO:GO:0055114 | EnsemblPlantsGene:GSMUA_AchrUn_randomG13930_001 | EnsemblPlants:GSMUA_AchrUn_randomP13930_001 | EnsemblPlants:GSMUA_AchrUn_randomT13930_001 | InterPro:IPR013766 |
| UniProt:M0U902 | PFAM:PF00085 | PFscan:PS51352 | PANTHER:PTHR10438 | PANTHER:PTHR10438:SF267 | SUPFAM:SSF52833 |
| InterPro:Thioredoxin | InterPro:Thioredoxin-like_sf | InterPro:Thioredoxin_domain | UniParc:UPI000295EC96 | : | : |
Description
Thioredoxin H4-1 [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG13930_001]
Coordinates
chrchrUn_random:+:65739005..65742963
Molecular Weight (calculated)
18806.4 Da
IEP (calculated)
5.213
GRAVY (calculated)
-0.125
Length
165 amino acids
Sequence
(BLAST)
(BLAST)
001: MSDCHLFLVK TLFSNFTSFI FYITLVKHNV RNSGNEDEVD FRGGNVHVIT SKSDWEQKIA EANKDGKIVV ANFSATWCSP CRTVAPVYRE LSEKYPSLIF
101: LTIDVDNLMD FCWSWDISAT PTFFFLKDGQ QLDKLIGAYG PELEHKIRLL DQSCQAPTDA TLPLR
101: LTIDVDNLMD FCWSWDISAT PTFFFLKDGQ QLDKLIGAYG PELEHKIRLL DQSCQAPTDA TLPLR
001: MGSCVSKGKG DDDSVHNVEF SGGNVHLITT KESWDDKLAE ADRDGKIVVA NFSATWCGPC KIVAPFFIEL SEKHSSLMFL LVDVDELSDF SSSWDIKATP
101: TFFFLKNGQQ IGKLVGANKP ELQKKVTSII DSVPESPQRP
101: TFFFLKNGQQ IGKLVGANKP ELQKKVTSII DSVPESPQRP
Arabidopsis Description
TRX9Thioredoxin H9 [Source:UniProtKB/Swiss-Prot;Acc:Q9C9Y6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.