Factsheet for GSMUA_Achr8P01700_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
plastid 1
peroxisome 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr9P18460_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G08710.1	GSMUA_Achr9P18460_001	AT3G02470.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P27870_001	Banana	cytosol	82.73	81.56
Os01t0168200-01	Rice	plasma membrane	62.59	66.41
TraesCS1D01G114000.1	Wheat	cytosol	61.15	64.89
TraesCS1B01G132600.1	Wheat	cytosol	61.15	64.89
TraesCS1A01G112400.1	Wheat	cytosol	61.15	64.89
Zm00001d037499_P001	Maize	cytosol	61.15	63.91
Os05t0169000-01	Rice	cytosol	59.71	62.88
EES19112	Sorghum	cytosol	58.99	61.19
VIT_08s0040g00020.t01	Wine grape	cytosol	61.15	61.15
PGSC0003DMT400076843	Potato	cytosol	35.97	60.98
KRH00477	Soybean	cytosol	60.43	60.43
AT3G08710.1	Thale cress	cytosol	59.71	59.29
CDY58647	Canola	cytosol	59.71	59.29
KXG31771	Sorghum	cytosol	63.31	58.67
CDY35999	Canola	cytosol	58.99	58.57
CDX73940	Canola	cytosol	58.99	58.57
Zm00001d039710_P004	Maize	cytosol	60.43	58.33
Bra040055.1-P	Field mustard	cytosol	56.83	57.66
KRH09556	Soybean	cytosol	56.83	57.66
HORVU1Hr1G024700.4	Barley	cytosol	60.43	57.53
Solyc09g015820.2.1	Tomato	plastid	62.59	56.49
CDY22165	Canola	cytosol	56.83	54.11
GSMUA_AchrUn_...	Banana	cytosol, plasma membrane, plastid	61.87	52.12
KRH64869	Soybean	cytosol	56.12	50.98
Bra001346.1-P	Field mustard	cytosol	58.99	50.0
KRH40706	Soybean	mitochondrion	58.99	48.52
PGSC0003DMT400059108	Potato	cytosol	46.76	46.76
Solyc03g095500.2.1	Tomato	cytosol	46.04	46.04
Bra014691.1-P	Field mustard	cytosol, mitochondrion	38.13	39.55
GSMUA_Achr4P22400_001	Banana	cytosol, unclear	32.37	39.47
CDY27984	Canola	nucleus	58.99	38.86
Bra007245.1-P	Field mustard	plastid	38.85	38.57
CDY70695	Canola	cytosol	38.13	38.41
CDY32015	Canola	mitochondrion	41.01	37.75
CDX67647	Canola	mitochondrion	41.01	37.75
CDX72138	Canola	mitochondrion	40.29	37.58
CDY27215	Canola	mitochondrion	40.29	37.58
CDY67121	Canola	mitochondrion	41.01	37.5
AT3G56420.2	Thale cress	mitochondrion	40.29	36.36
AT2G40790.1	Thale cress	cytosol	38.85	35.06
GSMUA_Achr2P17610_001	Banana	cytosol	28.06	34.21
GSMUA_Achr2P17710_001	Banana	cytosol	28.06	30.71
GSMUA_Achr9P10960_001	Banana	mitochondrion, plastid	27.34	30.65
GSMUA_Achr9P30140_001	Banana	cytosol	29.5	30.6
GSMUA_Achr5P26380_001	Banana	cytosol	28.06	30.23
GSMUA_Achr7P16980_001	Banana	cytosol	20.86	28.16
GSMUA_Achr7P12220_001	Banana	cytosol	21.58	25.86
GSMUA_Achr8P01040_001	Banana	plastid	28.78	22.35
CDY00656	Canola	cytosol	58.27	21.72
GSMUA_Achr11P...	Banana	mitochondrion	16.55	14.29

Protein Annotations

MapMan:10.6.1	Gene3D:3.40.30.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005623
GO:GO:0006662	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0015035	GO:GO:0019725
GO:GO:0045454	GO:GO:0055114	EnsemblPlantsGene:GSMUA_Achr8G01700_001	EnsemblPlants:GSMUA_Achr8P01700_001	EnsemblPlants:GSMUA_Achr8T01700_001	InterPro:IPR013766
UniProt:M0TLS2	PFAM:PF00085	PIRSF:PIRSF000077	PRINTS:PR00421	ScanProsite:PS00194	PFscan:PS51352
PANTHER:PTHR10438	PANTHER:PTHR10438:SF267	SUPFAM:SSF52833	InterPro:Thioredoxin	InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_CS
InterPro:Thioredoxin_domain	UniParc:UPI000295309A	SEG:seg	:	:	:

Description

Thioredoxin H4-1 [Source:GMGC_GENE;Acc:GSMUA_Achr8G01700_001]

Coordinates

chr8:+:1315204..1321633

Molecular Weight (calculated)

15275.2 Da

IEP (calculated)

4.756

GRAVY (calculated)

-0.219

Length

139 amino acids

Sequence
(BLAST)

001: MGNCSGKKGG GGDLEDEINF RGGNVHVITS KEGWDQKVSE ANKDGKIVIA NFSAGWCGPC RAMAPVYMEL SEKYLSLMFL SIDVDELTEF SSSWDIHATP
101: TFLFLKDGQL LDKLIGANRS DLEKKIIMFV DSCSKNSNL

Best Arabidopsis Sequence Match ( AT3G08710.2 )
(BLAST)

001: MGSCVSKGKG DDDSVHNVEF SGGNVHLITT KESWDDKLAE ADRDGKIVVA NFSATWCGPC KIVAPFFIEL SEKHSSLMFL LVDVDELSDF SSSWDIKATP
101: TFFFLKNGQQ IGKLVGANKP ELQKKVTSII DSVPESPQRP

Arabidopsis Description

TRX9Thioredoxin H9 [Source:UniProtKB/Swiss-Prot;Acc:Q9C9Y6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.