Factsheet for Bra001346.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
vacuole 1
cytosol 2
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra001046.1-P
Bra021458.1-P
Bra039176.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G08710.1	Bra001046.1-P	AT3G02470.1	21798944
AT3G08710.1	Bra021458.1-P	AT3G02470.1	21798944
AT3G08710.1	Bra039176.1-P	AT3G02470.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX73940	Canola	cytosol	85.37	100.0
AT3G08710.1	Thale cress	cytosol	79.27	92.86
Bra040055.1-P	Field mustard	cytosol	71.95	86.13
VIT_08s0040g00020.t01	Wine grape	cytosol	62.8	74.1
KRH00477	Soybean	cytosol	62.8	74.1
KRH09556	Soybean	cytosol	57.32	68.61
Os01t0168200-01	Rice	plasma membrane	54.27	67.94
PGSC0003DMT400076843	Potato	cytosol	32.93	65.85
TraesCS1D01G114000.1	Wheat	cytosol	51.83	64.89
TraesCS1B01G132600.1	Wheat	cytosol	51.83	64.89
TraesCS1A01G112400.1	Wheat	cytosol	51.83	64.89
Zm00001d037499_P001	Maize	cytosol	52.44	64.66
Solyc09g015820.2.1	Tomato	plastid	59.76	63.64
Os05t0169000-01	Rice	cytosol	50.0	62.12
KRH64869	Soybean	cytosol	57.93	62.09
EES19112	Sorghum	cytosol	49.39	60.45
GSMUA_Achr5P27870_001	Banana	cytosol	51.83	60.28
KRH40706	Soybean	mitochondrion	60.98	59.17
GSMUA_Achr8P01700_001	Banana	cytosol	50.0	58.99
HORVU1Hr1G024700.4	Barley	cytosol	50.0	56.16
KXG31771	Sorghum	cytosol	51.22	56.0
Zm00001d039710_P004	Maize	cytosol	48.78	55.56
GSMUA_AchrUn_...	Banana	cytosol, plasma membrane, plastid	48.17	47.88
Bra014691.1-P	Field mustard	cytosol, mitochondrion	34.15	41.79
Bra007245.1-P	Field mustard	plastid	35.37	41.43
Bra012872.1-P	Field mustard	cytosol	28.66	41.23
Bra036839.1-P	Field mustard	cytosol	28.66	41.23
Bra027469.1-P	Field mustard	cytosol	26.22	34.96
Bra031769.1-P	Field mustard	cytosol	25.61	33.33
Bra036335.1-P	Field mustard	cytosol	23.78	33.33
Bra014037.1-P	Field mustard	cytosol	23.78	33.05
Bra025762.1-P	Field mustard	cytosol	23.78	32.77
Bra028445.1-P	Field mustard	cytosol	26.22	32.33
Bra017898.1-P	Field mustard	cytosol	24.39	31.25
Bra040318.1-P	Field mustard	cytosol	23.78	30.0
Bra027837.1-P	Field mustard	cytosol	22.56	28.91
Bra016258.1-P	Field mustard	cytosol	22.56	24.5
Bra003977.1-P	Field mustard	cytosol	20.12	22.15
Bra003976.1-P	Field mustard	cytosol	18.9	21.99
Bra023564.1-P	Field mustard	plastid	25.0	21.93
Bra021417.1-P	Field mustard	plastid	23.17	20.88
Bra040596.1-P	Field mustard	plastid	21.34	19.34

Protein Annotations

MapMan:10.6.1	Gene3D:3.40.30.10	EnsemblPlantsGene:Bra001346	EnsemblPlants:Bra001346.1	EnsemblPlants:Bra001346.1-P	GO:GO:0003674
GO:GO:0003824	GO:GO:0005575	GO:GO:0005623	GO:GO:0006662	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0015035	GO:GO:0019725	GO:GO:0045454	GO:GO:0055114	InterPro:IPR013766
UniProt:M4CAW7	PFAM:PF00085	PRINTS:PR00421	ScanProsite:PS00194	PFscan:PS51352	PANTHER:PTHR10438
PANTHER:PTHR10438:SF267	SUPFAM:SSF52833	InterPro:Thioredoxin	InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_CS	InterPro:Thioredoxin_domain
UniParc:UPI0002540620	:	:	:	:	:

Description

AT3G08710 (E=3e-048) ATH9 | ATH9 (thioredoxin H-type 9)

Coordinates

chrA03:-:15945442..15946133

Molecular Weight (calculated)

18076.6 Da

IEP (calculated)

6.106

GRAVY (calculated)

-0.103

Length

164 amino acids

Sequence
(BLAST)

001: MGSCVSKGKE DDDSIHNVDF SGGNVHLITT KESWDEKLAE AGRDGKIVIF LIWSVVCVFS KSHEPSSSLK KVIANFSATW CGPCKVVAPF FIELSEKHPS
101: IMFLLVDVDE LSDFSSSWDI KATPTFFFLK NGQQIGKLVG ANKPELQKKV TSILDSVPES PQRP

Best Arabidopsis Sequence Match ( AT3G08710.2 )
(BLAST)

001: MGSCVSKGKG DDDSVHNVEF SGGNVHLITT KESWDDKLAE ADRDGKIVVA NFSATWCGPC KIVAPFFIEL SEKHSSLMFL LVDVDELSDF SSSWDIKATP
101: TFFFLKNGQQ IGKLVGANKP ELQKKVTSII DSVPESPQRP

Arabidopsis Description

TRX9Thioredoxin H9 [Source:UniProtKB/Swiss-Prot;Acc:Q9C9Y6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.