Factsheet for Solyc09g015820.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g089610.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G08710.1	Solyc02g089610.1.1	AT3G02470.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400076843	Potato	cytosol	52.6	98.78
VIT_08s0040g00020.t01	Wine grape	cytosol	66.88	74.1
CDY35999	Canola	cytosol	65.58	72.14
AT3G08710.1	Thale cress	cytosol	64.29	70.71
CDY58647	Canola	cytosol	64.29	70.71
KRH00477	Soybean	cytosol	63.64	70.5
Bra040055.1-P	Field mustard	cytosol	62.34	70.07
KRH09556	Soybean	cytosol	62.34	70.07
CDX73940	Canola	cytosol	63.64	70.0
CDY22165	Canola	cytosol	62.34	65.75
Os01t0168200-01	Rice	plasma membrane	55.84	65.65
GSMUA_Achr5P27870_001	Banana	cytosol	59.74	65.25
TraesCS1D01G114000.1	Wheat	cytosol	54.55	64.12
TraesCS1B01G132600.1	Wheat	cytosol	54.55	64.12
TraesCS1A01G112400.1	Wheat	cytosol	54.55	64.12
GSMUA_Achr8P01700_001	Banana	cytosol	56.49	62.59
Zm00001d037499_P001	Maize	cytosol	53.9	62.41
KRH64869	Soybean	cytosol	61.04	61.44
Os05t0169000-01	Rice	cytosol	52.6	61.36
EES19112	Sorghum	cytosol	52.6	60.45
Bra001346.1-P	Field mustard	cytosol	63.64	59.76
KXG31771	Sorghum	cytosol	56.49	58.0
Zm00001d039710_P004	Maize	cytosol	53.9	57.64
HORVU1Hr1G024700.4	Barley	cytosol	53.25	56.16
KRH40706	Soybean	mitochondrion	61.04	55.62
Solyc03g095500.2.1	Tomato	cytosol	44.81	49.64
GSMUA_AchrUn_...	Banana	cytosol, plasma membrane, plastid	51.95	48.48
CDY27984	Canola	nucleus	65.58	47.87
Solyc02g084710.2.1	Tomato	extracellular	31.17	40.68
Solyc03g118560.1.1	Tomato	cytosol	30.52	38.52
Solyc02g079960.2.1	Tomato	cytosol	31.17	38.4
Solyc04g080850.2.1	Tomato	extracellular	30.52	38.21
Solyc04g005810.2.1	Tomato	plastid	26.62	30.83
Solyc05g006830.2.1	Tomato	cytosol, plastid	26.62	30.37
Solyc05g006870.2.1	Tomato	cytosol	25.97	29.63
Solyc05g006860.2.1	Tomato	cytosol	24.68	28.15
Solyc05g006850.2.1	Tomato	cytosol	24.68	28.15
CDY00656	Canola	cytosol	64.29	26.54
Solyc02g087630.2.1	Tomato	plastid	22.73	20.71
Solyc05g056300.2.1	Tomato	plastid	24.03	20.33

Protein Annotations

MapMan:10.6.1	Gene3D:3.40.30.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0004791	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0005829	GO:GO:0005886
GO:GO:0006662	GO:GO:0006950	GO:GO:0007154	GO:GO:0008150	GO:GO:0008152	GO:GO:0009536
GO:GO:0009987	GO:GO:0015035	GO:GO:0016020	GO:GO:0016671	GO:GO:0019725	GO:GO:0034599
GO:GO:0045454	GO:GO:0047134	GO:GO:0055114	GO:GO:0098869	InterPro:IPR013766	UniProt:K4CS50
PFAM:PF00085	PIRSF:PIRSF000077	PRINTS:PR00421	ScanProsite:PS00194	PFscan:PS51352	PANTHER:PTHR10438
PANTHER:PTHR10438:SF267	SUPFAM:SSF52833	EnsemblPlantsGene:Solyc09g015820.2	EnsemblPlants:Solyc09g015820.2.1	InterPro:Thioredoxin	InterPro:Thioredoxin-like_sf
InterPro:Thioredoxin_CS	InterPro:Thioredoxin_domain	UniParc:UPI000276BF24	SEG:seg	:	:

Description

Thioredoxin H9 [Source:Projected from Arabidopsis thaliana (AT3G08710) UniProtKB/Swiss-Prot;Acc:Q9C9Y6]

Coordinates

chr9:+:11222730..11230873

Molecular Weight (calculated)

17129.2 Da

IEP (calculated)

4.809

GRAVY (calculated)

-0.311

Length

154 amino acids

Sequence
(BLAST)

001: MGISDTVRSL FPCIKSHSTS DGDDSTHNVE FAGGNVSLIT TKESWDQKLA EAKKEGKIVI ANFSASWCGP CRMISPFYCE LSEKYLSLMF LTVDVDELTE
101: FSSSWDIKAT PTFFFLKDGE QIDKLVGANK PELQKKITTV ADRHVACEPQ PQPQ

Best Arabidopsis Sequence Match ( AT3G08710.2 )
(BLAST)

001: MGSCVSKGKG DDDSVHNVEF SGGNVHLITT KESWDDKLAE ADRDGKIVVA NFSATWCGPC KIVAPFFIEL SEKHSSLMFL LVDVDELSDF SSSWDIKATP
101: TFFFLKNGQQ IGKLVGANKP ELQKKVTSII DSVPESPQRP

Arabidopsis Description

TRX9Thioredoxin H9 [Source:UniProtKB/Swiss-Prot;Acc:Q9C9Y6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.