Factsheet for Solyc04g080850.2.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 1
plastid 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

extracellular: 22892874
plastid: 22908117
nucleus: 28394025
extracellular: 29876421

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 22892874 doi

EH Konozy, H Rogniaux, M Causse, M Faurobert

Unité de Génétique et Amélioration des Fruits et Légumes, INRA, BP 94, 84143 Montfavet, France. ehkonozy@yahoo.com

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400009623	Potato	cytosol	91.87	91.87
KRH51778	Soybean	endoplasmic reticulum	66.67	70.09
Solyc02g084710.2.1	Tomato	extracellular	65.04	67.8
KRH61100	Soybean	cytosol	64.23	67.52
KRH05879	Soybean	endoplasmic reticulum	65.04	65.04
KRH15131	Soybean	cytosol, nucleus	60.98	63.03
TraesCS1B01G339000.1	Wheat	cytosol	56.1	58.47
TraesCS1D01G327500.1	Wheat	cytosol, plastid	56.1	57.98
HORVU1Hr1G075560.1	Barley	cytosol	53.66	54.1
TraesCS1B01G338800.1	Wheat	cytosol, golgi, plastid, unclear	55.28	53.54
Zm00001d038652_P003	Maize	cytosol	55.28	53.12
TraesCS1A01G325600.1	Wheat	cytosol	54.47	51.54
TraesCS7A01G562100.1	Wheat	cytosol	43.9	50.94
OQU78269	Sorghum	cytosol	52.03	50.79
Solyc05g006870.2.1	Tomato	cytosol	52.03	47.41
Solyc05g006830.2.1	Tomato	cytosol, plastid	48.78	44.44
Solyc05g006860.2.1	Tomato	cytosol	48.78	44.44
Solyc04g005810.2.1	Tomato	plastid	47.97	44.36
Solyc05g006850.2.1	Tomato	cytosol	46.34	42.22
TraesCS7D01G001000.1	Wheat	cytosol	37.4	40.71
Solyc03g118560.1.1	Tomato	cytosol	39.02	39.34
Solyc02g079960.2.1	Tomato	cytosol	31.71	31.2
Solyc09g015820.2.1	Tomato	plastid	38.21	30.52
Solyc02g087630.2.1	Tomato	plastid	39.84	28.99
Solyc03g095500.2.1	Tomato	cytosol	32.52	28.78
Solyc05g056300.2.1	Tomato	plastid	34.15	23.08

Protein Annotations

MapMan:10.6.1	MapMan:18.7.2	Gene3D:3.40.30.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0004791
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006662	GO:GO:0006950
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0015035	GO:GO:0016671	GO:GO:0019725
GO:GO:0034599	GO:GO:0045454	GO:GO:0047134	GO:GO:0055114	GO:GO:0098869	InterPro:IPR013766
UniProt:K4BVG4	PFAM:PF00085	PRINTS:PR00421	ScanProsite:PS00194	PFscan:PS51352	PANTHER:PTHR10438
PANTHER:PTHR10438:SF370	SUPFAM:SSF52833	EnsemblPlantsGene:Solyc04g080850.2	EnsemblPlants:Solyc04g080850.2.1	TIGRFAMs:TIGR01068	InterPro:Thioredoxin
InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_CS	InterPro:Thioredoxin_domain	UniParc:UPI0002765C83	:	:

Description

No Description!

Coordinates

chr4:-:64920744..64923006

Molecular Weight (calculated)

13564.6 Da

IEP (calculated)

6.256

GRAVY (calculated)

0.018

Length

123 amino acids

Sequence
(BLAST)

001: MATSSEEGQV IGCHKVEEWK VQLQKGVETK KLVVVDFTAS WCGPCRFIAP ILADIAKKMP HVMFLKVDVD ELKKVAEEWN VEAMPTFVFI KEGKEVDRVV
101: GANKDGLLQT IEKHGAAPAV VTA

Best Arabidopsis Sequence Match ( AT3G51030.1 )
(BLAST)

001: MASEEGQVIA CHTVETWNEQ LQKANESKTL VVVDFTASWC GPCRFIAPFF ADLAKKLPNV LFLKVDTDEL KSVASDWAIQ AMPTFMFLKE GKILDKVVGA
101: KKDELQSTIA KHLA

Arabidopsis Description

TRX1Thioredoxin H1 [Source:UniProtKB/Swiss-Prot;Acc:P29448]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.