Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- cytosol 5
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
extracellular:
22364583
unclear: 26455813 extracellular: 29876421 |
msms PMID:
29876421
doi
Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.
msms PMID:
26455813
doi
Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400009306 | Potato | cytosol | 96.61 | 96.61 |
| VIT_04s0023g02700.t01 | Wine grape | cytosol | 77.12 | 79.13 |
| Bra036839.1-P | Field mustard | cytosol | 71.19 | 73.68 |
| CDX77974 | Canola | cytosol | 71.19 | 73.68 |
| CDY28996 | Canola | cytosol | 71.19 | 73.68 |
| Bra012872.1-P | Field mustard | cytosol | 70.34 | 72.81 |
| CDX90669 | Canola | cytosol | 70.34 | 72.81 |
| AT3G51030.1 | Thale cress | cytosol | 68.64 | 71.05 |
| KRH76717 | Soybean | endoplasmic reticulum, nucleus | 70.34 | 69.17 |
| KRH28739 | Soybean | cytosol | 69.49 | 68.33 |
| GSMUA_Achr4P22400_001 | Banana | cytosol, unclear | 63.56 | 65.79 |
| Solyc04g080850.2.1 | Tomato | extracellular | 67.8 | 65.04 |
| CDY34470 | Canola | cytosol | 28.81 | 58.62 |
| GSMUA_Achr2P17610_001 | Banana | cytosol | 53.39 | 55.26 |
| TraesCS1D01G327500.1 | Wheat | cytosol, plastid | 52.54 | 52.1 |
| TraesCS1B01G339000.1 | Wheat | cytosol | 51.69 | 51.69 |
| HORVU1Hr1G075560.1 | Barley | cytosol | 48.31 | 46.72 |
| OQU78269 | Sorghum | cytosol | 49.15 | 46.03 |
| TraesCS1B01G338800.1 | Wheat | cytosol, golgi, plastid, unclear | 49.15 | 45.67 |
| TraesCS1A01G325600.1 | Wheat | cytosol | 50.0 | 45.38 |
| TraesCS7A01G562100.1 | Wheat | cytosol | 39.83 | 44.34 |
| Zm00001d038652_P003 | Maize | cytosol | 47.46 | 43.75 |
| Solyc05g006870.2.1 | Tomato | cytosol | 46.61 | 40.74 |
| Solyc05g006830.2.1 | Tomato | cytosol, plastid | 46.61 | 40.74 |
| TraesCS7D01G001000.1 | Wheat | cytosol | 38.14 | 39.82 |
| Solyc05g006860.2.1 | Tomato | cytosol | 44.92 | 39.26 |
| Solyc03g118560.1.1 | Tomato | cytosol | 39.83 | 38.52 |
| CDX73752 | Canola | cytosol, mitochondrion | 71.19 | 38.18 |
| Solyc04g005810.2.1 | Tomato | plastid | 42.37 | 37.59 |
| Solyc05g006850.2.1 | Tomato | cytosol | 42.37 | 37.04 |
| Solyc02g079960.2.1 | Tomato | cytosol | 37.29 | 35.2 |
| Solyc03g095500.2.1 | Tomato | cytosol | 39.83 | 33.81 |
| Solyc09g015820.2.1 | Tomato | plastid | 40.68 | 31.17 |
| Solyc02g087630.2.1 | Tomato | plastid | 39.83 | 27.81 |
| Solyc05g056300.2.1 | Tomato | plastid | 37.29 | 24.18 |
Protein Annotations
| MapMan:10.6.1 | MapMan:18.7.2 | Gene3D:3.40.30.10 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004791 |
| GO:GO:0005575 | GO:GO:0005576 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006662 |
| GO:GO:0006950 | GO:GO:0008047 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0015035 |
| GO:GO:0016671 | GO:GO:0019725 | GO:GO:0030234 | GO:GO:0034599 | GO:GO:0043085 | GO:GO:0045454 |
| GO:GO:0047134 | GO:GO:0048046 | GO:GO:0055114 | GO:GO:0098869 | InterPro:IPR013766 | UniProt:K4BAY6 |
| PFAM:PF00085 | PIRSF:PIRSF000077 | PRINTS:PR00421 | ScanProsite:PS00194 | PFscan:PS51352 | PANTHER:PTHR10438 |
| PANTHER:PTHR10438:SF370 | SUPFAM:SSF52833 | EnsemblPlantsGene:Solyc02g084710.2 | EnsemblPlants:Solyc02g084710.2.1 | InterPro:Thioredoxin | InterPro:Thioredoxin-like_sf |
| InterPro:Thioredoxin_CS | InterPro:Thioredoxin_domain | UniParc:UPI0002768C42 | : | : | : |
Description
Thioredoxin [Source:UniProtKB/TrEMBL;Acc:K4BAY6]
Coordinates
chr2:+:47816560..47818246
Molecular Weight (calculated)
13016.8 Da
IEP (calculated)
6.943
GRAVY (calculated)
0.029
Length
118 amino acids
Sequence
(BLAST)
(BLAST)
001: MAEGGQVFGV HTVDEWHQHL QKGIDNKKLL VVDFTASWCG PCKFIAPFLA ELAKKIPTVT FLKVDVDELK SVATDWAVEA MPTFMFIKEG KIVDKVVGAK
101: KDELQQTIAK HISSTSSA
101: KDELQQTIAK HISSTSSA
001: MASEEGQVIA CHTVETWNEQ LQKANESKTL VVVDFTASWC GPCRFIAPFF ADLAKKLPNV LFLKVDTDEL KSVASDWAIQ AMPTFMFLKE GKILDKVVGA
101: KKDELQSTIA KHLA
101: KKDELQSTIA KHLA
Arabidopsis Description
TRX1Thioredoxin H1 [Source:UniProtKB/Swiss-Prot;Acc:P29448]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.