Factsheet for Solyc03g025530.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

plastid: 20363867
plastid: 22908117
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400040825	Potato	plastid	95.12	95.12
Solyc06g036040.1.1	Tomato	plastid	18.66	63.54
Solyc06g036030.1.1	Tomato	cytosol	8.59	61.36
Zm00001d041148_P001	Maize	cytosol	22.8	60.06
KRH38456	Soybean	plastid	47.61	50.91
CDX91640	Canola	plastid	36.9	47.93
CDY27070	Canola	plastid	36.59	47.52
Bra022589.1-P	Field mustard	plastid	36.06	46.77
CDY16870	Canola	plastid	44.54	46.31
KRH08938	Soybean	plastid	47.83	46.26
AT5G52410.2	Thale cress	plastid	37.22	46.12
Bra026478.1-P	Field mustard	plastid	43.27	45.79
AT5G23890.1	Thale cress	plastid	45.81	45.67
CDX88055	Canola	plastid	44.64	45.17
KRG91542	Soybean	plastid	33.51	45.08
CDX87153	Canola	plastid	43.05	44.91
Bra009713.1-P	Field mustard	plastid	44.22	44.74
CDX80394	Canola	plastid	44.11	44.59
KRH35286	Soybean	plastid	44.22	44.31
VIT_16s0050g00600.t01	Wine grape	plastid	48.99	42.82
TraesCS5D01G563800.1	Wheat	golgi	38.28	40.56
GSMUA_Achr11P...	Banana	plastid	41.04	40.19
TraesCS5B01G572300.1	Wheat	plastid	38.18	39.6
Os03t0862100-01	Rice	plastid	38.49	39.54
TraesCS7B01G000400.2	Wheat	plastid	38.18	38.75
GSMUA_Achr5P12350_001	Banana	endoplasmic reticulum, plasma membrane, vacuole	37.54	38.35
HORVU5Hr1G124610.7	Barley	mitochondrion	38.49	38.33
Zm00001d020493_P001	Maize	cytosol	16.54	38.14
EER93049	Sorghum	plastid	37.12	37.04
Zm00001d034935_P007	Maize	plastid	36.9	34.32
Solyc05g009940.2.1	Tomato	plastid	16.33	26.69

Protein Annotations

EnsemblPlants:Solyc03g025530.2.1	EnsemblPlantsGene:Solyc03g025530.2	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	InterPro:IPR001119
InterPro:SLH_dom	ncoils:Coil	PANTHER:PTHR33740	PANTHER:PTHR33740:SF3	PFscan:PS51272	SEG:seg
TMHMM:TMhelix	UniParc:UPI0002768C96	UniProt:K4BF26	MapMan:35.2	:	:

Description

No Description!

Coordinates

chr3:-:2911517..2919038

Molecular Weight (calculated)

102913.0 Da

IEP (calculated)

4.339

GRAVY (calculated)

-0.485

Length

943 amino acids

Sequence
(BLAST)

001: MSSLTTTWCP NSFQLRLAFR SRKPSAVFAG MRVGKLDYRG VRLVSITMNS VSNGGVEKTS AGGVNSTASA DGFSGWSGAD GAEKPSDSQG KKSIAGMVGA
101: GAAGIILVSG LTFAALSISR RSSTGIKQQM EPLTAQEEMS IDSDNHNDTV QEEKALGDNE FKDNSGEELE AGRISEDTDD GNPTSVGVFV DDSHETHIQH
201: DLDDGKASDD AVVASEVISE SPETTFVMSS YESEEDSLIA GKPEPTTEPE QKNYNDDEVA AASVISPNST YEFDNEVRVS SLEGRGHSEI SLESPPIEPS
301: NLNTAVNPQS EALLEPMITQ EVYVETQSSF STTNVDPSEM LEIPSDGDKS SFEVHKSNRD EVPGTASVST TAYDHLRNDF KDINASRSSI NPTDLGDVFT
401: SAGIPAPSTI SPALQAPPGR VLVPASFDQV QGQALSALQA LKVIESDVQP GDLCTRREYA RWLVSASSAL SRTTVSKVYP AMYIEKVTDL AFDDITPEDP
501: DFPSIQGLAE AGLLSSKLSR RDMQSSLDDD QTPVFFCPES PLSRQDLVSW KMAIEKRQLP IVDQKSVQRV SGFIDVDKIH PDAWPAVVAD LSSGEQGIMA
601: LAFGYTRLFQ PDKPVTKAQA AIALATGEAS DIVGEELARI EAESMADKAV SAHNALVAEV EKDVNASFEK ELLLEREKIE AVEKLAEEAR RELESLRAQR
701: EEENLALMKE RAVVDSEMEI LSRLRRDVEE QLQTLVSDKL EITYDKERIE KLRKDAEFET QEIARLQYEL EVERKALSLA RTWAEDEAKK AREQAKALEE
801: ARDRWQKQGI KVVVDSDLQE EANAGVTWQN AGNESAESTV NSAETLVDKL KEMADTVRGK SRETIHMIIE KIMLLITMLK EWALKAGKQT EELKDAAMSK
901: MGNSVQGMQQ SSAEVGSALK DGVKRFADDC RGGVEKISQK FKT

Best Arabidopsis Sequence Match ( AT5G23890.1 )
(BLAST)

001: MASATATWTP TSLQLRLALS SGVRRKSPAV YLRPSRLARK SGYGIVCVSQ KPEVDAWTGS DSSKSSADNL AGWDDSDNDD KKSSRVKKKS LIEGVVGAGV
101: AGIILFLGLS YAAASFSKRT KKQEMHSLTS QQESMIQSSD EISSDEIKVA NSEESNLKDE DKSIESNDVA QKSDEGSGED KLLGKETSSF DGVMTDEADA
201: TESIPQNTPE ADLMVNAETD PETAESEKII SESKSLLDSS TEPILLDAES SNLVGVENTN SEDPESLLNT EPTNVSDLEN HVNSQKEDSL SSLSGIDAYA
301: ASGTVTELPE VSSQLDSTSK PQIVPLNDTE TAFATAEELS EVNGTPEYFE TSDWSSISDI DTTKELESSK SPVPESTDGS KDELNIYSQD ELDDNRMLLE
401: IPSGGSAFSS AGIPAPFMSV IVNPGKILVP VAADQIQCQA FAALQVLKVI ETDTQPSDLC TRREYARWLI SASSALSRNT TSKVYPAMYI ENVTELAFDD
501: ITPEDPDFSS IQGLAEAGLI ASKLSNRDLL DDVEGTFLFS PESLLSRQDL ISWKMALEKR QLPEADKKML YKLSGFIDID KINPDAWPSI IADLSTGEQG
601: IAALAFGCTR LFQPHKPVTK GQAAIALSSG EASDIVSEEL ARIEAESMAE KAVSAHNALV AEVEKDVNAS FEKELSMERE KIEAVEKMAE LAKVELEQLR
701: EKREEENLAL VKERAAVESE MEVLSRLRRD AEEKLEDLMS NKAEITFEKE RVFNLRKEAE EESQRISKLQ YELEVERKAL SMARSWAEEE AKKAREQGRA
801: LEEARKRWET NGLRVVVDKD LQETSSRETE QSIVLNEMER SSVEETERRA KTLMDKLKEM AGTVSGKSRE VIFTVMEKIR LWITVLKEYA VNLGKRAGEM
901: RDAAIVRAKG AAADVEQGTV QVSDKVKKMA EECRDGVGKI SQRFKT

Arabidopsis Description

GPI-anchored adhesin-like protein [Source:UniProtKB/TrEMBL;Acc:Q9FF91]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.