Factsheet for PGSC0003DMT400040825

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
nucleus 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g025530.2.1	Tomato	plastid	95.12	95.12
PGSC0003DMT400076923	Potato	golgi, mitochondrion	30.54	63.3
Zm00001d041148_P001	Maize	cytosol	22.91	60.34
KRH38456	Soybean	plastid	48.46	51.81
CDX91640	Canola	plastid	37.43	48.62
CDY27070	Canola	plastid	37.01	48.07
Bra022589.1-P	Field mustard	plastid	36.48	47.32
KRH08938	Soybean	plastid	48.57	46.97
AT5G52410.2	Thale cress	plastid	37.54	46.52
CDY16870	Canola	plastid	44.33	46.09
AT5G23890.1	Thale cress	plastid	45.92	45.77
Bra026478.1-P	Field mustard	plastid	43.16	45.68
KRG91542	Soybean	plastid	33.93	45.65
CDX88055	Canola	plastid	44.96	45.49
Bra009713.1-P	Field mustard	plastid	44.64	45.17
KRH35286	Soybean	plastid	44.96	45.06
CDX80394	Canola	plastid	44.33	44.8
CDX87153	Canola	plastid	42.74	44.58
VIT_16s0050g00600.t01	Wine grape	plastid	49.31	43.1
TraesCS5D01G563800.1	Wheat	golgi	38.18	40.45
GSMUA_Achr11P...	Banana	plastid	41.25	40.39
TraesCS5B01G572300.1	Wheat	plastid	38.28	39.71
Os03t0862100-01	Rice	plastid	38.6	39.65
GSMUA_Achr5P12350_001	Banana	endoplasmic reticulum, plasma membrane, vacuole	38.28	39.11
TraesCS7B01G000400.2	Wheat	plastid	38.07	38.64
HORVU5Hr1G124610.7	Barley	mitochondrion	38.6	38.44
Zm00001d020493_P001	Maize	cytosol	16.65	38.39
EER93049	Sorghum	plastid	37.65	37.57
Zm00001d034935_P007	Maize	plastid	36.9	34.32
PGSC0003DMT400002108	Potato	plastid	16.33	26.69

Protein Annotations

EnsemblPlants:PGSC0003DMT400040825	EnsemblPlantsGene:PGSC0003DMG400015786	EntrezGene:102602745	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0009536	GO:GO:0009941	GO:GO:0016020	GO:GO:0016021	ncoils:Coil
PANTHER:PTHR33740	PANTHER:PTHR33740:SF3	PGSC:PGSC0003DMG400015786	RefSeq:XP_006353868.1	SEG:seg	TMHMM:TMhelix
UniParc:UPI000294D7B5	UniProt:M1BAH1	MapMan:35.2	:	:	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400015786]

Coordinates

chr3:+:43384590..43391593

Molecular Weight (calculated)

102856.0 Da

IEP (calculated)

4.333

GRAVY (calculated)

-0.479

Length

943 amino acids

Sequence
(BLAST)

001: MSSLTTTWCP NSFQLRLAFR SKKPLAVFAG MRVGKLDYRG VRLVSITMNS VSNGGVEKTS AGGVNSTASA DGFSGWSGAD GAEKPSDSQG KKSIAGMVGA
101: GAAGIILVSG LTFAALSISR RSSTRIKQQM EPLTTQEEMS IDSDNHNDTV QEENVLGDNE FKDNSGEEFQ ASRISEDTDD GNPSSVGVFV DESHETHIQN
201: DLDDRKASDD AVVASEAISE SPEATFVMSS YESEEDSLGA GKPEPTTEPE QKNYNDDEVA AASVISPNST YEIDDQVGVS SLEGPGHSEI SLDSPPIEPS
301: DLNTAVNPQS EALLEPVITR EVYAETQSSF STTNVDLTEM LEVPSDGDKS SFEVHKSNRD EVPGTASVST TAYDHLGNDF KDMHASRSSF NSTDPGDVFT
401: SAGIPAPSTI SPALQAPPGR VLVPASFDQV QGQALSALQA LKVIESDVQP GDLCTRREYA RWLVSASSAL SRTTVSKVYP AMYIENVTDL AFDDITPEDP
501: DFPSIQGLAE AGLLSSKLSR RDMQSSLDDD QSPVFFCPES PLSRQDLVSW KMAIEKRQLP IVDQKSVQRV SGFIDVDKIH PDAWPALVAD VSSGEQGIVA
601: LAFGYTRLFQ PDKPVTKAQA AIALATGEAS DIVGEELARI EAESMAEKAV SAHNALVAEV EKDVNASFEK ELLLEREKIA AVEKLAEEAR RELESLRAQR
701: EEENLALMKE RAVVDSEMEI LSRLRRDVEE QLQTLVSDKL EITYDKERIE KLRKDAEFET QEIARLQYEL EVERKALSLA RTWAEDEAKK AREQAKALEE
801: ARDRWQKQGI KVVVDNDLQE EANAGVTWQN AGNESVESTV NRAETLVDKL KEMADTVRGK SRETIHMIIE KIMLLITMLK EWALKAGKQT EELKDVAMSK
901: MGNSVQGMQQ SSAEVGSALK DGVKRFADDC RGGVEKISQK FKT

Best Arabidopsis Sequence Match ( AT5G23890.1 )
(BLAST)

001: MASATATWTP TSLQLRLALS SGVRRKSPAV YLRPSRLARK SGYGIVCVSQ KPEVDAWTGS DSSKSSADNL AGWDDSDNDD KKSSRVKKKS LIEGVVGAGV
101: AGIILFLGLS YAAASFSKRT KKQEMHSLTS QQESMIQSSD EISSDEIKVA NSEESNLKDE DKSIESNDVA QKSDEGSGED KLLGKETSSF DGVMTDEADA
201: TESIPQNTPE ADLMVNAETD PETAESEKII SESKSLLDSS TEPILLDAES SNLVGVENTN SEDPESLLNT EPTNVSDLEN HVNSQKEDSL SSLSGIDAYA
301: ASGTVTELPE VSSQLDSTSK PQIVPLNDTE TAFATAEELS EVNGTPEYFE TSDWSSISDI DTTKELESSK SPVPESTDGS KDELNIYSQD ELDDNRMLLE
401: IPSGGSAFSS AGIPAPFMSV IVNPGKILVP VAADQIQCQA FAALQVLKVI ETDTQPSDLC TRREYARWLI SASSALSRNT TSKVYPAMYI ENVTELAFDD
501: ITPEDPDFSS IQGLAEAGLI ASKLSNRDLL DDVEGTFLFS PESLLSRQDL ISWKMALEKR QLPEADKKML YKLSGFIDID KINPDAWPSI IADLSTGEQG
601: IAALAFGCTR LFQPHKPVTK GQAAIALSSG EASDIVSEEL ARIEAESMAE KAVSAHNALV AEVEKDVNAS FEKELSMERE KIEAVEKMAE LAKVELEQLR
701: EKREEENLAL VKERAAVESE MEVLSRLRRD AEEKLEDLMS NKAEITFEKE RVFNLRKEAE EESQRISKLQ YELEVERKAL SMARSWAEEE AKKAREQGRA
801: LEEARKRWET NGLRVVVDKD LQETSSRETE QSIVLNEMER SSVEETERRA KTLMDKLKEM AGTVSGKSRE VIFTVMEKIR LWITVLKEYA VNLGKRAGEM
901: RDAAIVRAKG AAADVEQGTV QVSDKVKKMA EECRDGVGKI SQRFKT

Arabidopsis Description

GPI-anchored adhesin-like protein [Source:UniProtKB/TrEMBL;Acc:Q9FF91]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.