CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra009713.1-P	Field mustard	plastid	96.89	96.89
CDX80394	Canola	plastid	90.77	90.68
CDY16870	Canola	plastid	72.96	74.97
CDX87153	Canola	plastid	70.17	72.35
AT5G23890.1	Thale cress	plastid	71.46	70.4
Zm00001d041148_P001	Maize	cytosol	22.0	57.26
Solyc06g036040.1.1	Tomato	plastid	16.31	54.87
Solyc06g036030.1.1	Tomato	cytosol	7.73	54.55
PGSC0003DMT400076923	Potato	golgi, mitochondrion	25.43	52.09
CDX91640	Canola	plastid	37.88	48.62
CDY27070	Canola	plastid	37.77	48.48
KRH38456	Soybean	plastid	43.45	45.92
PGSC0003DMT400040825	Potato	plastid	45.49	44.96
Solyc03g025530.2.1	Tomato	plastid	45.17	44.64
KRH08938	Soybean	plastid	44.96	42.97
KRH35286	Soybean	plastid	41.2	40.81
KRG91542	Soybean	plastid	30.58	40.66
GSMUA_Achr11P...	Banana	plastid	39.59	38.32
TraesCS5D01G563800.1	Wheat	golgi	36.59	38.31
VIT_16s0050g00600.t01	Wine grape	plastid	44.31	38.28
GSMUA_Achr5P12350_001	Banana	endoplasmic reticulum, plasma membrane, vacuole	37.88	38.24
Os03t0862100-01	Rice	plastid	37.12	37.69
Zm00001d020493_P001	Maize	cytosol	16.52	37.65
TraesCS7B01G000400.2	Wheat	plastid	36.59	36.71
TraesCS5B01G572300.1	Wheat	plastid	35.73	36.63
EER93049	Sorghum	plastid	36.59	36.08
HORVU5Hr1G124610.7	Barley	mitochondrion	36.37	35.8
Zm00001d034935_P007	Maize	plastid	36.8	33.83
CDY04174	Canola	plastid	15.99	27.59
CDY59871	Canola	plastid	15.56	26.61

Protein Annotations

EnsemblPlants:CDX88055	EnsemblPlantsGene:GSBRNA2T00147469001	GO:A0A078DFT1	ncoils:Coil	PANTHER:PTHR33740	PANTHER:PTHR33740:SF6
ProteinID:CDX88055	ProteinID:CDX88055.1	SEG:seg	TMHMM:TMhelix	UniParc:UPI0004EE9CE7	MapMan:35.2

Description

BnaA06g26460D

Coordinates

chrLK031854:+:326195..330385

Molecular Weight (calculated)

101433.0 Da

IEP (calculated)

4.344

GRAVY (calculated)

-0.469

Length

932 amino acids

Sequence
(BLAST)

001: MASATATWTP TSLQLRLALS SGVRRKSNAV FLRPSRIGRK SGCGVVCCVS QKPEVEAWTG SDSSNPPADG LAGWADSGNG NGNKSSRAKK KSLIEGVVGA
101: GVAAIVLFAG LTYAVSSFNK RNHARRKPEL TSHQESVLIS SDETPSDEAK VANSEENILK EEVESIENND IGQQGDEDKI LGTEDSSLDG IVSDGSDATE
201: NITSETTPEA ELKLHVQSDP DMPESEKIIS ESESIDSQKS DITGAENPEE PDSLPDTELS NVSDLENQVD SQKEDSMSSL SETDAYAATE TVAVGVLVAS
301: QSDSTSDPHT VPLNAAGSAF SIVTEDLPEV NGTPEDLAAG SMSSISDVDT AKEVESSETP VSEESSYLSK NELSVDSEVE LSDNGLLETP SGGSAFSSAG
401: IPAPSISFQV NPGKILVPAA ADQVQCQAFA ALQVLKVIET DIKPSDLCTR REYARWLVSA SSALSRNTTS KVYPAMYIEN VTELAFDDIT PEDPDFSSIQ
501: GLAEAGLITS KLSNRDLLND VEGTFLFSPE SLLSRQDLIS WKMALEKRQL PVADKKMLYD LSGFIDIEKI NPDAWPAIIA DLSTGEQGIA ALAFGCTRLF
601: QPHKPVTKAQ AAIALSNGEA SDIVIEELAR IEAESMAEKA VSAHNALVAE VEKDVNASFE KELSLEREKI EAVEKMAEQV KLELEQLREK REEENLVLVK
701: ERAAVESEME VLSRLRREAE EKLEDLMSNK AEISFEKEKV SSLRKEAEEE SQRISKLQYE LEVERKALSM ARSWAEEEGK RAREQARALE EARKRWETNG
801: LRVIVDKDLQ ENVETEQSVL LNTVERSSIE GTEERAQTLM DKLKEMAKSV GGKSREVISM VMEKIRSWIM VLKEYAENLG KRAGEMREAA VVKAKGAAKE
901: VEKGTVQVGD KVKRMAEECR DGVGKITQRF KT

Best Arabidopsis Sequence Match ( AT5G23890.1 )
(BLAST)

001: MASATATWTP TSLQLRLALS SGVRRKSPAV YLRPSRLARK SGYGIVCVSQ KPEVDAWTGS DSSKSSADNL AGWDDSDNDD KKSSRVKKKS LIEGVVGAGV
101: AGIILFLGLS YAAASFSKRT KKQEMHSLTS QQESMIQSSD EISSDEIKVA NSEESNLKDE DKSIESNDVA QKSDEGSGED KLLGKETSSF DGVMTDEADA
201: TESIPQNTPE ADLMVNAETD PETAESEKII SESKSLLDSS TEPILLDAES SNLVGVENTN SEDPESLLNT EPTNVSDLEN HVNSQKEDSL SSLSGIDAYA
301: ASGTVTELPE VSSQLDSTSK PQIVPLNDTE TAFATAEELS EVNGTPEYFE TSDWSSISDI DTTKELESSK SPVPESTDGS KDELNIYSQD ELDDNRMLLE
401: IPSGGSAFSS AGIPAPFMSV IVNPGKILVP VAADQIQCQA FAALQVLKVI ETDTQPSDLC TRREYARWLI SASSALSRNT TSKVYPAMYI ENVTELAFDD
501: ITPEDPDFSS IQGLAEAGLI ASKLSNRDLL DDVEGTFLFS PESLLSRQDL ISWKMALEKR QLPEADKKML YKLSGFIDID KINPDAWPSI IADLSTGEQG
601: IAALAFGCTR LFQPHKPVTK GQAAIALSSG EASDIVSEEL ARIEAESMAE KAVSAHNALV AEVEKDVNAS FEKELSMERE KIEAVEKMAE LAKVELEQLR
701: EKREEENLAL VKERAAVESE MEVLSRLRRD AEEKLEDLMS NKAEITFEKE RVFNLRKEAE EESQRISKLQ YELEVERKAL SMARSWAEEE AKKAREQGRA
801: LEEARKRWET NGLRVVVDKD LQETSSRETE QSIVLNEMER SSVEETERRA KTLMDKLKEM AGTVSGKSRE VIFTVMEKIR LWITVLKEYA VNLGKRAGEM
901: RDAAIVRAKG AAADVEQGTV QVSDKVKKMA EECRDGVGKI SQRFKT

Arabidopsis Description

GPI-anchored adhesin-like protein [Source:UniProtKB/TrEMBL;Acc:Q9FF91]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.