CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
nucleus 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY27070	Canola	plastid	93.94	93.94
AT5G52410.2	Thale cress	plastid	74.52	71.09
Zm00001d041148_P001	Maize	cytosol	28.1	56.98
Solyc06g036030.1.1	Tomato	cytosol	9.92	54.55
Solyc06g036040.1.1	Tomato	plastid	20.11	52.71
PGSC0003DMT400076923	Potato	golgi, mitochondrion	30.58	48.79
KRH38456	Soybean	plastid	48.62	40.02
CDY16870	Canola	plastid	48.21	38.59
CDX80394	Canola	plastid	49.45	38.48
CDX87153	Canola	plastid	47.8	38.38
CDX88055	Canola	plastid	48.62	37.88
PGSC0003DMT400040825	Potato	plastid	48.62	37.43
Solyc03g025530.2.1	Tomato	plastid	47.93	36.9
Zm00001d020493_P001	Maize	cytosol	20.39	36.19
KRH08938	Soybean	plastid	48.07	35.79
TraesCS5D01G563800.1	Wheat	golgi	42.29	34.49
GSMUA_Achr11P...	Banana	plastid	45.18	34.06
VIT_16s0050g00600.t01	Wine grape	plastid	50.55	34.01
GSMUA_Achr5P12350_001	Banana	endoplasmic reticulum, plasma membrane, vacuole	43.11	33.91
KRH35286	Soybean	plastid	43.94	33.9
TraesCS7B01G000400.2	Wheat	plastid	42.98	33.58
Os03t0862100-01	Rice	plastid	42.15	33.33
TraesCS5B01G572300.1	Wheat	plastid	41.18	32.89
HORVU5Hr1G124610.7	Barley	mitochondrion	42.29	32.42
KRG91542	Soybean	plastid	31.27	32.38
EER93049	Sorghum	plastid	41.32	31.75
Zm00001d034935_P007	Maize	plastid	41.32	29.59
CDY04174	Canola	plastid	20.25	27.22
CDY59871	Canola	plastid	20.11	26.79

Protein Annotations

EnsemblPlants:CDX91640	EnsemblPlantsGene:GSBRNA2T00153093001	GO:A0A078DQP3	InterPro:IPR001119	InterPro:SLH_dom	ncoils:Coil
PANTHER:PTHR33740	PANTHER:PTHR33740:SF3	PFAM:PF00395	ProteinID:CDX91640	ProteinID:CDX91640.1	SEG:seg
TMHMM:TMhelix	UniParc:UPI0004EE36DC	MapMan:35.2	:	:	:

Description

BnaC02g15200D

Coordinates

chrLK031868:+:1429982..1433400

Molecular Weight (calculated)

81336.3 Da

IEP (calculated)

5.184

GRAVY (calculated)

-0.577

Length

726 amino acids

Sequence
(BLAST)

001: MASAMATWTP SSLQLRIALN YRSFKAAPAR AKLTKLSRRL RMSCAAQNAE SGRGSDRFRG WDDSGDDEMT SDSGGGDWYK GTLVSGVAGM VLFVGLAFAA
101: LSFKRHVLTR PKVEVMVSES SSDQVGETSH ERGNLMDQDE KESYKVSPLL ESKSASTSKE NHEVKKSSES RADGVDTETS QIPDEEKKPR CYTGIPAPST
201: VPPVNPLRPI FPTVVDPVQS QMFAALQALK VIESDARPYD LCTRREFARW LVSASNVLSR NSASKVYPAM YIENVTELAF DDITPEDPDF QFIQGLAEAG
301: IISSKLSNHN MSSSESSQLK FSPESPLSRQ DLLSWKMALE FRQLPEADSK KLYQLSGFVD IDKINPEAWP ALIADLSAGE NGITALAFGR TRLFQPSKAV
401: TKAQTAASLA TGEACEAVSE ELARIQAEAM AENVVSAHNA LVAQVEKEIN ASFEKELLRE KETVDAVVKL AEEAKTEMTR LRVEKEEETL ALEKERTSIE
501: TEMESLARLR NELEEQLQSL VNNKAEMSFE KERLGRLQKQ VEEENEEILR LQSELEVERN ALSRARDWAE DEARRATEQA KVLEEARGRW EKYGLKVIVD
601: RDLSEQTTTE STWLNAGKQY SVEGTMNRGE NAVAKLKKMA QDVRERSRDV IYSIVEKIRL LISALEKQVR GMSNKAKEVE MKTKSRAEDL RKQAGLKIGE
701: IRDVSMMRTK EVVEEFKDRV WKLKSK

Best Arabidopsis Sequence Match ( AT5G52410.3 )
(BLAST)

001: MASTMATWTP SSLQLRIALN HGIFKAPERA KMTKLSRRLR ISCVAQNAEP GRDSGESNGS DRFRGWADSG DDENNSRGGD WFKGTLLSGV AGMVLFVGLT
101: YAALSSKRNV LRPKVEVMVT TVTKSSIDQI STDENEGNIV TSQDNQESYR DSQVLSPDEI DVASKSTSTR KDNEEAEKAS VSSAERYTSS TELDGVDTHT
201: SQIPNEKQKA RRYTGIPAPS TVPQVDSLKP IFPTVVDPVQ SQMFAALQAL KVIESDALPY DLCTRREFAR WVVSASNTLS RNSASKVYPA MYIENVTELA
301: FDDITPEDPD FPFIQGLAEA GLISSKLSNN NMPSSESSRV TFSPESPLTR QDLLSWKMAL EFRQLPEADS KKLYQLSGFL DIDKINPEAW PALIADLSAG
401: EHGITALSFG RTRLFQPSKA VTKAQTAVSL AIGDAFEVVG EELARIEAEA MAENVVCAHN ELVAQVEKDI NASFEKELLR EKEIVDAVEK LAEEAKSELA
501: RLRVEKEEET LALERERTSI ETEMEALARI RNELEEQLQS LASNKAEMSY EKERFDRLQK QVEDENQEIL RLQNELEVER NALSIARDWA KDEARRAREQ
601: AKVLEEARGR WEKYGLKVIV DSDLHEQTTK TESTWLNAGK QNHVEGTMKR AGNLIAKLKK MAKDVGEKSR EVIYLIIEKI SLLISALKQQ VHGMENKAKD
701: LKIKTKSKAE EVWRQTSLRA DEIRNISIVK AKETVEEFKD RVGKLGEKFK SK

Arabidopsis Description

CONTAINS InterPro DOMAIN/s: S-layer homology domain (InterPro:IPR001119); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G23890.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - /.../ Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). [Source:TAIR;Acc:AT5G52410]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.