CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
endoplasmic reticulum 1
mitochondrion 2
vacuole 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra017353.1-P	Field mustard	plastid	99.63	99.63
CDY59871	Canola	plastid	94.26	93.39
AT3G25680.1	Thale cress	plastid	75.19	72.76
KRH70626	Soybean	plastid	45.56	45.9
KRH75517	Soybean	plastid	44.81	45.23
VIT_01s0011g02850.t01	Wine grape	plastid	47.96	44.97
Solyc05g009940.2.1	Tomato	plastid	45.0	42.11
PGSC0003DMT400002108	Potato	plastid	43.89	41.07
GSMUA_Achr2P07080_001	Banana	endoplasmic reticulum	18.33	36.94
GSMUA_Achr2P07070_001	Banana	extracellular, golgi	21.67	35.89
Zm00001d045938_P005	Maize	mitochondrion, plastid	35.56	34.29
KXG19937	Sorghum	mitochondrion	35.37	34.23
TraesCS7A01G228700.1	Wheat	plastid	35.0	34.05
TraesCS7B01G195000.1	Wheat	plastid	35.0	34.05
TraesCS7D01G229800.1	Wheat	plastid	35.0	34.05
Zm00001d037438_P002	Maize	plastid	34.81	33.51
HORVU7Hr1G046700.22	Barley	cytosol, nucleus	32.22	29.9
Os06t0499000-01	Rice	plastid	16.3	26.04
CDY27070	Canola	plastid	27.78	20.66
CDX91640	Canola	plastid	27.22	20.25
CDX87153	Canola	plastid	27.59	16.48
CDY16870	Canola	plastid	27.22	16.21
CDX80394	Canola	plastid	27.78	16.08
CDX88055	Canola	plastid	27.59	15.99

Protein Annotations

EnsemblPlants:CDY04174	EnsemblPlantsGene:GSBRNA2T00117862001	GO:A0A078EUB6	InterPro:IPR001119	InterPro:SLH_dom	ncoils:Coil
PANTHER:PTHR33740	PANTHER:PTHR33740:SF1	PFAM:PF00395	PFscan:PS51272	ProteinID:CDY04174	ProteinID:CDY04174.1
SEG:seg	TMHMM:TMhelix	UniParc:UPI0004EF15FA	MapMan:35.2	:	:

Description

BnaA09g19520D

Coordinates

chrLK031949:+:981300..983981

Molecular Weight (calculated)

60988.5 Da

IEP (calculated)

5.380

GRAVY (calculated)

-0.398

Length

540 amino acids

Sequence
(BLAST)

001: MCSLSIRKPP NSSFIFPKFA PLLVRHRFTL PLLKPRSVRV VASLSGASWV SQASKDKYGG WGLIQDDSPL PHSKKWRNVV ITGVGSSLAL LLATLAYFSV
101: SRKGFRFSFS NPLHSSSVDL NQNENEESVE KTSASESDTE GVDYVSDTVD TSSSALKAHP ITTPVSVDAA QQEAIAVLKK LKIIEDDVMG DELCTRREYA
201: RWLVRLNSLL ERNPKHRIVP AVALAGSSVP AFEDVNITDP DFEYIQALAE AGITSSKLSG NDISFHPENF VSRLDLVNWK AELECDLHPE IMQEISRTKV
301: DYIDTKDLNP DMSLGFYLDF LMGDKSTIRN VFGRIKRFQP SRPVTKAQAA AALTTGKMAK AISEELSRLE AESFSQKAEM EEIRSELLEK GEIRQLWDEK
401: LQVERSRGVA MEELYLSRVN ELEQEKVSQL KWFAERLKEK AAIDCQKQLV TSLREDIDEM SQRLTTDESV YMVEHSELQK MLSELQSKLE SVLDKRSILE
501: AEVEALRILR TWVEDEAKAS QARAKVLEEA GRRWKWNDHS

Best Arabidopsis Sequence Match ( AT3G25680.1 )
(BLAST)

001: MSSFSVKKSP NSSFLFPKIT PLLIRHRLTL PLLVPPHKPP RFRIVASLSG TSWVSQASQD KYGGWALAED ETPSPHSITK KKWRNVVITG VGSSLAVVLA
101: TIAYFSISRK GFRFSFSNLL QYQNVELDQN DNEESETLFN DENNSPSEAN SESVDYVSDN VDSTSTGKTH RVATPVAVDA AQQEAIAVLK KLKIYEDDIV
201: ADELCTKREY ARWLVRSNSL LERNPMHMIV PAVALAGSSI PAFDDINTSD PDFEYIQALA EAGITSSKLS GEDSRNDLGN SNFNPESFVS RLDLVNWKAQ
301: LECGFHPEIM EEISRTKVDY IDTKNINPDM ALGFFLDFLM GDKSTIRNVF GRIKRFQPNR PVTKAQAAVA LTSGKMVKAI TAELSRLEAE SLSQKAETEE
401: IRSELLEKGE IRQFWDEKIQ AERSRGFEME ELYLSRVNEV EEEKTTQEKW SAERLKEKAA IDCQKQLLNS LTEEIDEMSQ RLISDKSVYL TEHSKLQEML
501: SDLQSKLESL IDKRSILEAE VEALRILRSW IEDEGKASQA RAKVLEEAGR RWKWNDNA

Arabidopsis Description

SLH domain protein [Source:UniProtKB/TrEMBL;Acc:F4JA39]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.