Factsheet for Os06t0499000-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 1
cytosol 1
nucleus 2

Predictors

GFP

MS/MS

Papers

plastid: 17189339
plastid: 21433289

msms PMID: 21433289 doi

S Reiland, J Grossmann, K Baerenfaller, P Gehrig, A Nunes-Nesi, AR Fernie, W Gruissem, S Baginsky

Department of Biology, Plant Biotechnology, ETH Zurich, Zurich, Switzerland.

msms PMID: 17189339 doi

T Kleffmann, A von Zychlinski, D Russenberger, M Hirsch-Hoffmann, P Gehrig, W Gruissem, S Baginsky

Institute of Plant Sciences, Eidgenössische Technische Hochschule Zurich, 8092 Zurich, Switzerland.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7A01G228700.1	Wheat	plastid	61.83	37.66
TraesCS7D01G229800.1	Wheat	plastid	61.54	37.48
TraesCS7B01G195000.1	Wheat	plastid	61.24	37.3
KXG19937	Sorghum	mitochondrion	54.44	32.97
Zm00001d045938_P005	Maize	mitochondrion, plastid	53.55	32.32
Zm00001d037438_P002	Maize	plastid	53.25	32.09
HORVU7Hr1G046700.22	Barley	cytosol, nucleus	50.3	29.21
KRH70626	Soybean	plastid	29.29	18.47
KRH75517	Soybean	plastid	27.81	17.57
AT3G25680.1	Thale cress	plastid	28.7	17.38
Bra017353.1-P	Field mustard	plastid	26.04	16.3
CDY04174	Canola	plastid	26.04	16.3
CDY59871	Canola	plastid	25.74	15.96
VIT_01s0011g02850.t01	Wine grape	plastid	26.04	15.28
Solyc05g009940.2.1	Tomato	plastid	25.15	14.73
PGSC0003DMT400002108	Potato	plastid	23.96	14.04
Os03t0862100-01	Rice	plastid	19.53	7.19
GSMUA_Achr2P07080_001	Banana	endoplasmic reticulum	1.78	2.24

Protein Annotations

EnsemblPlants:Os06t0499000-01	EnsemblPlantsGene:Os06g0499000	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	PANTHER:PTHR33740
PANTHER:PTHR33740:SF1	ProteinID:BAS97914.1	SEG:seg	TMHMM:TMhelix	UniParc:UPI000393BDD6	UniProt:A0A0P0WWZ7
MapMan:35.2	:	:	:	:	:

Description

Conserved hypothetical protein. (Os06t0499000-01)

Coordinates

chr6:+:17555674..17562332

Molecular Weight (calculated)

37433.9 Da

IEP (calculated)

8.148

GRAVY (calculated)

-0.593

Length

338 amino acids

Sequence
(BLAST)

001: MATATAYTLR LSPPPPSPSP RRQQHHHAPL LPQRPRSRRG ATARAAAAAS WAPTDRGSDD GLGGWWLPVP EQQQQQKQPA ERGREVGIGI AGSRRALAVG
101: LGASAAIALV GMMWHLPSSR KCLQQFVHAP LHYVQEKLST LESKETPEED AGDKEWDNID VSKTANDERV DTKTDDSSQN HMPAGGVHVL FRAPVDPMHE
201: EAFSILKKLQ IIEKDASSSD FCSRREFARW FIKLHSKLER KKMHRIIPNR LTFGSVRSAF DDIDADDPDF LYIQSLGESG IVSSKLSNFL GTSTSGSSSD
301: SGNSNFLPNS YLSRFDLVNW KALVEHPFAT ELDQKSRC

Best Arabidopsis Sequence Match ( AT3G25680.1 )
(BLAST)

001: MSSFSVKKSP NSSFLFPKIT PLLIRHRLTL PLLVPPHKPP RFRIVASLSG TSWVSQASQD KYGGWALAED ETPSPHSITK KKWRNVVITG VGSSLAVVLA
101: TIAYFSISRK GFRFSFSNLL QYQNVELDQN DNEESETLFN DENNSPSEAN SESVDYVSDN VDSTSTGKTH RVATPVAVDA AQQEAIAVLK KLKIYEDDIV
201: ADELCTKREY ARWLVRSNSL LERNPMHMIV PAVALAGSSI PAFDDINTSD PDFEYIQALA EAGITSSKLS GEDSRNDLGN SNFNPESFVS RLDLVNWKAQ
301: LECGFHPEIM EEISRTKVDY IDTKNINPDM ALGFFLDFLM GDKSTIRNVF GRIKRFQPNR PVTKAQAAVA LTSGKMVKAI TAELSRLEAE SLSQKAETEE
401: IRSELLEKGE IRQFWDEKIQ AERSRGFEME ELYLSRVNEV EEEKTTQEKW SAERLKEKAA IDCQKQLLNS LTEEIDEMSQ RLISDKSVYL TEHSKLQEML
501: SDLQSKLESL IDKRSILEAE VEALRILRSW IEDEGKASQA RAKVLEEAGR RWKWNDNA

Arabidopsis Description

SLH domain protein [Source:UniProtKB/TrEMBL;Acc:F4JA39]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.