Factsheet for PGSC0003DMT400002108

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 8

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g009940.2.1	Tomato	plastid	91.51	91.51
KRH70626	Soybean	plastid	45.06	48.51
KRH75517	Soybean	plastid	44.89	48.41
VIT_01s0011g02850.t01	Wine grape	plastid	46.45	46.53
Bra017353.1-P	Field mustard	plastid	41.25	44.07
CDY59871	Canola	plastid	41.59	44.04
CDY04174	Canola	plastid	41.07	43.89
AT3G25680.1	Thale cress	plastid	41.94	43.37
GSMUA_Achr2P07080_001	Banana	endoplasmic reticulum	17.85	38.43
TraesCS7D01G229800.1	Wheat	plastid	34.66	36.04
TraesCS7A01G228700.1	Wheat	plastid	34.66	36.04
TraesCS7B01G195000.1	Wheat	plastid	34.49	35.86
GSMUA_Achr2P07070_001	Banana	extracellular, golgi	19.24	34.05
Zm00001d045938_P005	Maize	mitochondrion, plastid	32.93	33.93
KXG19937	Sorghum	mitochondrion	32.76	33.87
Zm00001d037438_P002	Maize	plastid	32.58	33.51
HORVU7Hr1G046700.22	Barley	cytosol, nucleus	32.58	32.3
Os06t0499000-01	Rice	plastid	14.04	23.96
PGSC0003DMT400076923	Potato	golgi, mitochondrion	16.98	21.54
PGSC0003DMT400040825	Potato	plastid	26.69	16.33

Protein Annotations

EnsemblPlants:PGSC0003DMT400002108	EnsemblPlantsGene:PGSC0003DMG400000804	EntrezGene:102580691	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0009507	GO:GO:0009536	GO:GO:0009941	GO:GO:0016020	GO:GO:0016021
ncoils:Coil	PANTHER:PTHR33740	PANTHER:PTHR33740:SF1	PGSC:PGSC0003DMG400000804	RefSeq:XP_006362523.1	SEG:seg
TMHMM:TMhelix	UniParc:UPI00029582F8	UniProt:M0ZJM3	MapMan:35.2	:	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400000804]

Coordinates

chr5:+:1848726..1854983

Molecular Weight (calculated)

65404.8 Da

IEP (calculated)

4.977

GRAVY (calculated)

-0.427

Length

577 amino acids

Sequence
(BLAST)

001: MCSSVIPSSL TFSPKSRFIY SQDLVFTSYP FLLRTRIPKF PLSASVSEKV AEVSWGISDP NVFDEYNGWD FVEPPVEKKK KKGLSKFLVI GMSVSLAAGL
101: GVASYFSLYQ KGFKIQFTGP FHESHDSLVS NEAANKGKDG ETVDLPMESA QISETVEGVS DFDDKNVVLE TSHVSTKGVT RGVLGRITIP FAVDSTQEEA
201: LFMLKKLKII EDDVKADELC SRREYARWLV KENTQLERSR KHRIAPSVVL SGSTIAAFDD VSVEDPDFAT IQSLAEAGII PSKLSDKEFA STPNVSEDQG
301: ACFFPDRFLS RQDLISWKAK IEYEIMPGID KEISRKNIGF LDVRDINSEA LVELFVDLRA GEQSILRRVF GQAKRFQPDK PSTKAQAAVS LTSGRMEEYI
401: QSELAKLEAE NLSRLMAMEE IKSDLLDRGE IQRIWESKME VEKSRGLEVD SAYLDSIRDL KQERIVQENA RAELLRQKAA LDCQKQLLSS LKEEVDEMSE
501: KLAREKFKHV DEQCDLSGTI HDLQVKHEVL LDKKSMLEAE IEALRKLRSW VEDEARRSQA RAKVLEEVER RWKWEEQ

Best Arabidopsis Sequence Match ( AT3G25680.1 )
(BLAST)

001: MSSFSVKKSP NSSFLFPKIT PLLIRHRLTL PLLVPPHKPP RFRIVASLSG TSWVSQASQD KYGGWALAED ETPSPHSITK KKWRNVVITG VGSSLAVVLA
101: TIAYFSISRK GFRFSFSNLL QYQNVELDQN DNEESETLFN DENNSPSEAN SESVDYVSDN VDSTSTGKTH RVATPVAVDA AQQEAIAVLK KLKIYEDDIV
201: ADELCTKREY ARWLVRSNSL LERNPMHMIV PAVALAGSSI PAFDDINTSD PDFEYIQALA EAGITSSKLS GEDSRNDLGN SNFNPESFVS RLDLVNWKAQ
301: LECGFHPEIM EEISRTKVDY IDTKNINPDM ALGFFLDFLM GDKSTIRNVF GRIKRFQPNR PVTKAQAAVA LTSGKMVKAI TAELSRLEAE SLSQKAETEE
401: IRSELLEKGE IRQFWDEKIQ AERSRGFEME ELYLSRVNEV EEEKTTQEKW SAERLKEKAA IDCQKQLLNS LTEEIDEMSQ RLISDKSVYL TEHSKLQEML
501: SDLQSKLESL IDKRSILEAE VEALRILRSW IEDEGKASQA RAKVLEEAGR RWKWNDNA

Arabidopsis Description

SLH domain protein [Source:UniProtKB/TrEMBL;Acc:F4JA39]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.