Factsheet for Zm00001d037438_P002

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
mitochondrion 4
cytosol 1

Predictors

GFP

MS/MS

Papers

plastid: 22065420

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d045938_P005	Maize	mitochondrion, plastid	86.99	87.14
TraesCS7A01G228700.1	Wheat	plastid	61.32	61.98
TraesCS7D01G229800.1	Wheat	plastid	61.14	61.8
TraesCS7B01G195000.1	Wheat	plastid	60.78	61.44
HORVU7Hr1G046700.22	Barley	cytosol, nucleus	56.33	54.3
Os06t0499000-01	Rice	plastid	32.09	53.25
GSMUA_Achr2P07080_001	Banana	endoplasmic reticulum	18.36	38.43
Bra017353.1-P	Field mustard	plastid	33.51	34.81
CDY04174	Canola	plastid	33.51	34.81
KRH75517	Soybean	plastid	32.98	34.58
CDY59871	Canola	plastid	33.51	34.5
KRH70626	Soybean	plastid	32.62	34.14
VIT_01s0011g02850.t01	Wine grape	plastid	33.87	32.99
AT3G25680.1	Thale cress	plastid	32.62	32.8
PGSC0003DMT400002108	Potato	plastid	33.51	32.58
Solyc05g009940.2.1	Tomato	plastid	33.16	32.24
Zm00001d041148_P001	Maize	cytosol	18.89	29.61
Zm00001d020493_P001	Maize	cytosol	14.79	20.29
Zm00001d034935_P007	Maize	plastid	26.2	14.5

Protein Annotations

EnsemblPlants:Zm00001d037438_P002	EnsemblPlants:Zm00001d037438_T002	EnsemblPlantsGene:Zm00001d037438	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
ncoils:Coil	PANTHER:PTHR33740	PANTHER:PTHR33740:SF1	ProteinID:AQK83978.1	SEG:seg	TMHMM:TMhelix
UniParc:UPI0008445688	UniProt:A0A1D6LXU7	MapMan:35.2	:	:	:

Description

Expressed protein; protein

Coordinates

chr6:-:125414259..125423404

Molecular Weight (calculated)

63869.8 Da

IEP (calculated)

5.568

GRAVY (calculated)

-0.523

Length

561 amino acids

Sequence
(BLAST)

001: MAVGPYALRL SPPPRLDAML FPQLRPHLRR RVSARVAASG TTWSPAANDS EDSFGGWWFP EYEKHMKQGR RRIGFQSAVV VGLGASAAIA LAGLAWRFPS
101: SRKRIQQLIV APLHYVQDKL STMESTEIIK EDASERESDE IEVSSATHDK KAEAITDDSR QNYRTAIASH FLFRVHTDPV HEEAFSILKK LQIIEKDVSS
201: SDFCTRREFA RWFVKLSSKF ERKRMCRIVP NKLTSDTVQC AFDDVNIDDP DFLYIQSLGE SGIVSSKLSN SLEMLTSGSP CSKGNTLFLP DSYLSRFDLV
301: NWKVLVEHPR ALRIDEKIPS QNVCILDLRA CPDVSPSMLI ELMAGENNII SRVFGNTRRL QPGKPVTKAQ AAAALTSGRM KEAVHEELNK LEAENQAHLS
401: LIAEIMEELI SRGDIQQQWE QKMKKEQERA LEVDNNLQHV LHEHANERTD REEELADLLK ERAALECQNQ ELINLRSEID GMYDRLATEN EEVMADQQTL
501: ENLMSDMTSK HQAVNEAKSY LEAEKEALTM LRTWVEDEAG RVHERAETLE KALRRWRIPE D

Best Arabidopsis Sequence Match ( AT3G25680.1 )
(BLAST)

001: MSSFSVKKSP NSSFLFPKIT PLLIRHRLTL PLLVPPHKPP RFRIVASLSG TSWVSQASQD KYGGWALAED ETPSPHSITK KKWRNVVITG VGSSLAVVLA
101: TIAYFSISRK GFRFSFSNLL QYQNVELDQN DNEESETLFN DENNSPSEAN SESVDYVSDN VDSTSTGKTH RVATPVAVDA AQQEAIAVLK KLKIYEDDIV
201: ADELCTKREY ARWLVRSNSL LERNPMHMIV PAVALAGSSI PAFDDINTSD PDFEYIQALA EAGITSSKLS GEDSRNDLGN SNFNPESFVS RLDLVNWKAQ
301: LECGFHPEIM EEISRTKVDY IDTKNINPDM ALGFFLDFLM GDKSTIRNVF GRIKRFQPNR PVTKAQAAVA LTSGKMVKAI TAELSRLEAE SLSQKAETEE
401: IRSELLEKGE IRQFWDEKIQ AERSRGFEME ELYLSRVNEV EEEKTTQEKW SAERLKEKAA IDCQKQLLNS LTEEIDEMSQ RLISDKSVYL TEHSKLQEML
501: SDLQSKLESL IDKRSILEAE VEALRILRSW IEDEGKASQA RAKVLEEAGR RWKWNDNA

Arabidopsis Description

SLH domain protein [Source:UniProtKB/TrEMBL;Acc:F4JA39]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.