Factsheet for GSMUA_Achr2P07080_001

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

plastid 2
endoplasmic reticulum 3
nucleus 1
extracellular 2
vacuole 2
plasma membrane 2
golgi 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	plastid
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH75517	Soybean	plastid	40.67	20.37
KRH70626	Soybean	plastid	40.3	20.15
Zm00001d045938_P005	Maize	mitochondrion, plastid	40.67	19.46
TraesCS7D01G229800.1	Wheat	plastid	40.3	19.46
VIT_01s0011g02850.t01	Wine grape	plastid	41.79	19.44
KXG19937	Sorghum	mitochondrion	39.93	19.18
TraesCS7A01G228700.1	Wheat	plastid	39.55	19.1
TraesCS7B01G195000.1	Wheat	plastid	39.55	19.1
HORVU7Hr1G046700.22	Barley	cytosol, nucleus	40.3	18.56
CDY59871	Canola	plastid	37.69	18.53
AT3G25680.1	Thale cress	plastid	38.43	18.46
Zm00001d037438_P002	Maize	plastid	38.43	18.36
CDY04174	Canola	plastid	36.94	18.33
Bra017353.1-P	Field mustard	plastid	36.94	18.33
Solyc05g009940.2.1	Tomato	plastid	39.18	18.2
PGSC0003DMT400002108	Potato	plastid	38.43	17.85
GSMUA_Achr5P12350_001	Banana	endoplasmic reticulum, plasma membrane, vacuole	26.12	7.58
GSMUA_Achr11P...	Banana	plastid	26.49	7.37
GSMUA_Achr2P07070_001	Banana	extracellular, golgi	5.22	4.29
Os06t0499000-01	Rice	plastid	2.24	1.78

Protein Annotations

EnsemblPlants:GSMUA_Achr2P07080_001	EnsemblPlants:GSMUA_Achr2T07080_001	EnsemblPlantsGene:GSMUA_Achr2G07080_001	ncoils:Coil	PANTHER:PTHR33740	PANTHER:PTHR33740:SF1
SEG:seg	UniParc:UPI0002952009	UniProt:M0S5U9	MapMan:35.2	:	:

Description

Putative Whole genome shotgun sequence of line PN40024, scaffold_11.assembly12x (Fragment) [Source:GMGC_GENE;Acc:GSMUA_Achr2G07080_001]

Coordinates

chr2:+:11695785..11697365

Molecular Weight (calculated)

30571.2 Da

IEP (calculated)

4.476

GRAVY (calculated)

-0.356

Length

268 amino acids

Sequence
(BLAST)

001: MFRCTDWLFM EQDLILSSSN LQSFFLLYLS VILLGNIRRL QPHKPVTTAQ AAVVLTSGRT ADAIQRELSR LEAENISRLQ EAEEIRCELV QRGDIQRFWE
101: EKLAKEQERH FEVEKDLEVI FLDLEDEKAS LDGRLAEYAK EKAALDCQQH LLQCLKDEVE GMNDKLASER ANFISEQQSL ERFSADLCGK KDGIVEAKSI
201: LEAEIEATRI LRSWVEEEAL QMRNRADVLS QAVLRWQYTG VSGQSVTFSV DSNSSEIVLK PNGEQSVA

Best Arabidopsis Sequence Match ( AT3G25680.1 )
(BLAST)

001: MSSFSVKKSP NSSFLFPKIT PLLIRHRLTL PLLVPPHKPP RFRIVASLSG TSWVSQASQD KYGGWALAED ETPSPHSITK KKWRNVVITG VGSSLAVVLA
101: TIAYFSISRK GFRFSFSNLL QYQNVELDQN DNEESETLFN DENNSPSEAN SESVDYVSDN VDSTSTGKTH RVATPVAVDA AQQEAIAVLK KLKIYEDDIV
201: ADELCTKREY ARWLVRSNSL LERNPMHMIV PAVALAGSSI PAFDDINTSD PDFEYIQALA EAGITSSKLS GEDSRNDLGN SNFNPESFVS RLDLVNWKAQ
301: LECGFHPEIM EEISRTKVDY IDTKNINPDM ALGFFLDFLM GDKSTIRNVF GRIKRFQPNR PVTKAQAAVA LTSGKMVKAI TAELSRLEAE SLSQKAETEE
401: IRSELLEKGE IRQFWDEKIQ AERSRGFEME ELYLSRVNEV EEEKTTQEKW SAERLKEKAA IDCQKQLLNS LTEEIDEMSQ RLISDKSVYL TEHSKLQEML
501: SDLQSKLESL IDKRSILEAE VEALRILRSW IEDEGKASQA RAKVLEEAGR RWKWNDNA

Arabidopsis Description

SLH domain protein [Source:UniProtKB/TrEMBL;Acc:F4JA39]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.