Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 4
- extracellular 1
- endoplasmic reticulum 1
- vacuole 2
- plasma membrane 1
- golgi 1
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400002108 | Potato | plastid | 91.51 | 91.51 |
| KRH75517 | Soybean | plastid | 44.37 | 47.85 |
| VIT_01s0011g02850.t01 | Wine grape | plastid | 47.31 | 47.4 |
| KRH70626 | Soybean | plastid | 43.85 | 47.2 |
| Bra017353.1-P | Field mustard | plastid | 42.29 | 45.19 |
| CDY04174 | Canola | plastid | 42.11 | 45.0 |
| CDY59871 | Canola | plastid | 42.46 | 44.95 |
| AT3G25680.1 | Thale cress | plastid | 42.46 | 43.91 |
| GSMUA_Achr2P07080_001 | Banana | endoplasmic reticulum | 18.2 | 39.18 |
| TraesCS7D01G229800.1 | Wheat | plastid | 34.32 | 35.68 |
| TraesCS7A01G228700.1 | Wheat | plastid | 34.32 | 35.68 |
| TraesCS7B01G195000.1 | Wheat | plastid | 34.14 | 35.5 |
| Solyc06g036030.1.1 | Tomato | cytosol | 7.8 | 34.09 |
| Zm00001d045938_P005 | Maize | mitochondrion, plastid | 32.76 | 33.75 |
| GSMUA_Achr2P07070_001 | Banana | extracellular, golgi | 19.06 | 33.74 |
| KXG19937 | Sorghum | mitochondrion | 32.41 | 33.51 |
| Zm00001d037438_P002 | Maize | plastid | 32.24 | 33.16 |
| HORVU7Hr1G046700.22 | Barley | cytosol, nucleus | 32.24 | 31.96 |
| Os06t0499000-01 | Rice | plastid | 14.73 | 25.15 |
| Solyc06g036040.1.1 | Tomato | plastid | 9.88 | 20.58 |
| Solyc03g025530.2.1 | Tomato | plastid | 26.69 | 16.33 |
Protein Annotations
| EnsemblPlants:Solyc05g009940.2.1 | EnsemblPlantsGene:Solyc05g009940.2 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0009507 | GO:GO:0009536 | GO:GO:0009941 | GO:GO:0016020 | GO:GO:0016021 | InterPro:IPR001119 |
| InterPro:SLH_dom | ncoils:Coil | PANTHER:PTHR33740 | PANTHER:PTHR33740:SF1 | PFscan:PS51272 | SEG:seg |
| TMHMM:TMhelix | UniParc:UPI0002766E24 | UniProt:K4BXG8 | MapMan:35.2 | : | : |
Description
No Description!
Coordinates
chr5:-:4157776..4163933
Molecular Weight (calculated)
65025.2 Da
IEP (calculated)
4.885
GRAVY (calculated)
-0.405
Length
577 amino acids
Sequence
(BLAST)
(BLAST)
001: MCSSIIPSSL IFTPKSPFIY SQDLIFTSYP FHLRTRIPKF SLSASVSEKV AAVSWGVSDP NAIDEYNGWD FVEPPVEKKK KKGLSKFLVI GMSVSLAAGL
101: GVASYFSLYQ KGFKFQFSGP LHESHDSLAS NEASNKGEDG ETVDLSMGSD EISETVEGGS DFDDKNVVLE THNVSTKGVT RGVLGRITIP FAVDSTQEEA
201: LFMLKKLKII EDDVKADELC SRREYARWLI KANTQLERSR KHRIVPSVVL SGSTIAAFDD VGVEDPDFAT IQSLAEAGII PSKLPDKKFA STPNVSEDQG
301: VCFSPDRFLS RQDLISWKAK IEYEIMPVID KEISRKNIAF LDVRDINSEA LVELFVDLRA GEQSILRRVF GQAKRFQPDK PSTKAQAAVS LTSGRMEEYI
401: QSELAKLEAE NLSRLMTMEE IKSDLLDRGE IQRIWESNME VERSRGLEVE SAYLSSIGDL EQEKIVHENA RAELLKQKAA LDCQKQLLSS LKEEVDEMSE
501: KLACEKFKHV DEQCDLSGMI HDLQVKHEAL LDKKSMLEAE SEALRKLRSW VEDEARRSQA RAKVLEEVER RWRWEEQ
101: GVASYFSLYQ KGFKFQFSGP LHESHDSLAS NEASNKGEDG ETVDLSMGSD EISETVEGGS DFDDKNVVLE THNVSTKGVT RGVLGRITIP FAVDSTQEEA
201: LFMLKKLKII EDDVKADELC SRREYARWLI KANTQLERSR KHRIVPSVVL SGSTIAAFDD VGVEDPDFAT IQSLAEAGII PSKLPDKKFA STPNVSEDQG
301: VCFSPDRFLS RQDLISWKAK IEYEIMPVID KEISRKNIAF LDVRDINSEA LVELFVDLRA GEQSILRRVF GQAKRFQPDK PSTKAQAAVS LTSGRMEEYI
401: QSELAKLEAE NLSRLMTMEE IKSDLLDRGE IQRIWESNME VERSRGLEVE SAYLSSIGDL EQEKIVHENA RAELLKQKAA LDCQKQLLSS LKEEVDEMSE
501: KLACEKFKHV DEQCDLSGMI HDLQVKHEAL LDKKSMLEAE SEALRKLRSW VEDEARRSQA RAKVLEEVER RWRWEEQ
001: MSSFSVKKSP NSSFLFPKIT PLLIRHRLTL PLLVPPHKPP RFRIVASLSG TSWVSQASQD KYGGWALAED ETPSPHSITK KKWRNVVITG VGSSLAVVLA
101: TIAYFSISRK GFRFSFSNLL QYQNVELDQN DNEESETLFN DENNSPSEAN SESVDYVSDN VDSTSTGKTH RVATPVAVDA AQQEAIAVLK KLKIYEDDIV
201: ADELCTKREY ARWLVRSNSL LERNPMHMIV PAVALAGSSI PAFDDINTSD PDFEYIQALA EAGITSSKLS GEDSRNDLGN SNFNPESFVS RLDLVNWKAQ
301: LECGFHPEIM EEISRTKVDY IDTKNINPDM ALGFFLDFLM GDKSTIRNVF GRIKRFQPNR PVTKAQAAVA LTSGKMVKAI TAELSRLEAE SLSQKAETEE
401: IRSELLEKGE IRQFWDEKIQ AERSRGFEME ELYLSRVNEV EEEKTTQEKW SAERLKEKAA IDCQKQLLNS LTEEIDEMSQ RLISDKSVYL TEHSKLQEML
501: SDLQSKLESL IDKRSILEAE VEALRILRSW IEDEGKASQA RAKVLEEAGR RWKWNDNA
101: TIAYFSISRK GFRFSFSNLL QYQNVELDQN DNEESETLFN DENNSPSEAN SESVDYVSDN VDSTSTGKTH RVATPVAVDA AQQEAIAVLK KLKIYEDDIV
201: ADELCTKREY ARWLVRSNSL LERNPMHMIV PAVALAGSSI PAFDDINTSD PDFEYIQALA EAGITSSKLS GEDSRNDLGN SNFNPESFVS RLDLVNWKAQ
301: LECGFHPEIM EEISRTKVDY IDTKNINPDM ALGFFLDFLM GDKSTIRNVF GRIKRFQPNR PVTKAQAAVA LTSGKMVKAI TAELSRLEAE SLSQKAETEE
401: IRSELLEKGE IRQFWDEKIQ AERSRGFEME ELYLSRVNEV EEEKTTQEKW SAERLKEKAA IDCQKQLLNS LTEEIDEMSQ RLISDKSVYL TEHSKLQEML
501: SDLQSKLESL IDKRSILEAE VEALRILRSW IEDEGKASQA RAKVLEEAGR RWKWNDNA
Arabidopsis Description
SLH domain protein [Source:UniProtKB/TrEMBL;Acc:F4JA39]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.